Variant report

Variant	rs1608739
Chromosome Location	chr7:96259990-96259991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226466	0.95[EUR][1000 genomes]
rs10234669	0.87[EUR][1000 genomes]
rs10236162	0.91[EUR][1000 genomes]
rs10242066	1.00[EUR][1000 genomes]
rs10246774	0.95[EUR][1000 genomes]
rs10249910	0.91[EUR][1000 genomes]
rs10252396	0.95[EUR][1000 genomes]
rs10259875	0.95[EUR][1000 genomes]
rs10270175	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10270486	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10273237	0.95[EUR][1000 genomes]
rs10276660	0.95[EUR][1000 genomes]
rs10278521	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1581538	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17167680	0.91[EUR][1000 genomes]
rs17167699	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17413240	0.88[EUR][1000 genomes]
rs17495340	0.91[EUR][1000 genomes]
rs1917482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2140741	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272	0.95[EUR][1000 genomes]
rs3942589	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs55902035	0.95[EUR][1000 genomes]
rs67368115	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67548673	0.95[EUR][1000 genomes]
rs67658953	1.00[EUR][1000 genomes]
rs73228327	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228328	1.00[EUR][1000 genomes]
rs73228329	1.00[EUR][1000 genomes]
rs73228347	0.95[EUR][1000 genomes]
rs73228355	0.95[EUR][1000 genomes]
rs73228356	0.95[EUR][1000 genomes]
rs73228360	0.95[EUR][1000 genomes]
rs73228364	0.88[EUR][1000 genomes]
rs7341440	0.95[EUR][1000 genomes]
rs952005	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96249800-96292800	Weak transcription	Left Ventricle	heart
2	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:96258200-96299800	Weak transcription	Ovary	ovary
4	chr7:96259400-96260000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:96259800-96267000	Weak transcription	Aorta	Aorta

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