Variant report

Variant	rs17495340
Chromosome Location	chr7:96228453-96228454
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10226466	0.86[EUR][1000 genomes]
rs10236162	0.83[EUR][1000 genomes]
rs10242066	0.91[EUR][1000 genomes]
rs10246774	0.86[EUR][1000 genomes]
rs10249910	0.83[EUR][1000 genomes]
rs10252396	0.86[EUR][1000 genomes]
rs10259875	0.86[EUR][1000 genomes]
rs10270175	0.86[EUR][1000 genomes]
rs10270486	0.86[EUR][1000 genomes]
rs10273237	0.86[EUR][1000 genomes]
rs10276660	0.86[EUR][1000 genomes]
rs10278521	0.82[CEU][hapmap]
rs11760378	0.83[CEU][hapmap]
rs11773399	0.83[CEU][hapmap]
rs1581538	0.91[EUR][1000 genomes]
rs1608739	0.91[EUR][1000 genomes]
rs17167680	0.83[EUR][1000 genomes]
rs17167699	0.86[EUR][1000 genomes]
rs1917482	0.91[EUR][1000 genomes]
rs2140741	0.91[EUR][1000 genomes]
rs2272	0.86[EUR][1000 genomes]
rs3942589	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs55902035	0.86[EUR][1000 genomes]
rs67548673	0.86[EUR][1000 genomes]
rs67658953	0.91[EUR][1000 genomes]
rs73228327	0.91[EUR][1000 genomes]
rs73228328	0.91[EUR][1000 genomes]
rs73228329	0.91[EUR][1000 genomes]
rs73228347	0.86[EUR][1000 genomes]
rs73228355	0.86[EUR][1000 genomes]
rs73228356	0.86[EUR][1000 genomes]
rs73228360	0.86[EUR][1000 genomes]
rs7341440	0.86[EUR][1000 genomes]
rs952005	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96222000-96229000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:96222200-96231800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:96227800-96228600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:96227800-96229000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:96227800-96229200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:96227800-96229200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:96227800-96229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:96228200-96229400	Enhancers	Liver	Liver
9	chr7:96228400-96228800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:96228400-96228800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:96228400-96229000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:96228400-96229000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:96228400-96229600	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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