Variant report

Variant	rs10226466
Chromosome Location	chr7:96357756-96357757
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10234669	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10236162	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10242066	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10246774	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249910	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10252396	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10259875	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270175	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270486	1.00[EUR][1000 genomes]
rs10273237	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10276660	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278521	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1581538	0.95[EUR][1000 genomes]
rs1608739	0.95[EUR][1000 genomes]
rs17167680	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17167699	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17413240	0.93[EUR][1000 genomes]
rs17495340	0.86[EUR][1000 genomes]
rs1917482	0.95[EUR][1000 genomes]
rs2140741	0.95[EUR][1000 genomes]
rs2272	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3942589	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs55902035	1.00[EUR][1000 genomes]
rs67368115	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67548673	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67658953	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228327	0.95[EUR][1000 genomes]
rs73228328	0.95[EUR][1000 genomes]
rs73228329	0.95[EUR][1000 genomes]
rs73228347	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228355	1.00[EUR][1000 genomes]
rs73228356	1.00[EUR][1000 genomes]
rs73228360	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228364	0.93[EUR][1000 genomes]
rs7341440	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs952005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96351400-96372800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:96356600-96358200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:96356800-96357800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:96356800-96358400	Enhancers	HMEC	breast
5	chr7:96357000-96358200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:96357000-96359600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:96357200-96357800	Enhancers	Esophagus	oesophagus
8	chr7:96357200-96357800	Flanking Active TSS	NHEK	skin

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