Variant report

Variant	rs17167699
Chromosome Location	chr7:96310112-96310113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226466	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234669	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10236162	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10242066	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10246774	1.00[EUR][1000 genomes]
rs10249910	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10252396	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10259875	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270175	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270486	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10273237	1.00[EUR][1000 genomes]
rs10276660	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278521	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1581538	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1608739	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17167680	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17413240	0.93[EUR][1000 genomes]
rs17495340	0.86[EUR][1000 genomes]
rs1917482	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2140741	0.95[EUR][1000 genomes]
rs2272	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3942589	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs55902035	1.00[EUR][1000 genomes]
rs67368115	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67548673	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67658953	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228327	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228328	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228329	0.95[EUR][1000 genomes]
rs73228347	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228355	1.00[EUR][1000 genomes]
rs73228356	1.00[EUR][1000 genomes]
rs73228360	1.00[EUR][1000 genomes]
rs73228364	0.93[EUR][1000 genomes]
rs7341440	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs952005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:96266600-96317000	Weak transcription	Right Ventricle	heart
3	chr7:96284400-96320000	Weak transcription	Pancreas	Pancrea
4	chr7:96284400-96331200	Weak transcription	Lung	lung
5	chr7:96285600-96319800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:96287800-96317000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:96288200-96311600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:96291600-96314200	Weak transcription	Fetal Brain Male	brain
9	chr7:96292000-96320400	Weak transcription	HepG2	liver
10	chr7:96292800-96314400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:96293000-96313200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:96293000-96317200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:96293000-96317200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:96293400-96313600	Weak transcription	GM12878-XiMat	blood
15	chr7:96293600-96311400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:96293600-96313600	Weak transcription	Dnd41	blood
17	chr7:96293600-96320600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:96294000-96331200	Weak transcription	Esophagus	oesophagus
19	chr7:96294800-96314000	Weak transcription	HSMM	muscle
20	chr7:96295200-96326000	Weak transcription	Brain Angular Gyrus	brain
21	chr7:96295400-96320400	Weak transcription	Fetal Thymus	thymus
22	chr7:96295600-96323200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:96296400-96317000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:96296600-96317200	Weak transcription	Osteobl	bone
25	chr7:96296800-96315400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:96297000-96320600	Weak transcription	Fetal Intestine Large	intestine
27	chr7:96298200-96330600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:96298400-96314400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:96298600-96320600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:96298800-96315400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:96299000-96314200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:96299000-96337400	Weak transcription	NHLF	lung
33	chr7:96299400-96317200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:96299800-96313200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:96299800-96320400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:96300000-96320400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr7:96300000-96320600	Weak transcription	NHDF-Ad	bronchial
38	chr7:96300000-96337600	Weak transcription	NH-A	brain
39	chr7:96300200-96319000	Weak transcription	Fetal Lung	lung
40	chr7:96300200-96337000	Weak transcription	Fetal Kidney	kidney
41	chr7:96300400-96320600	Weak transcription	K562	blood
42	chr7:96300800-96310200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:96301000-96317200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:96301200-96323800	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:96301800-96313800	Weak transcription	Psoas Muscle	Psoas
46	chr7:96301800-96325400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr7:96302000-96313200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr7:96302000-96317200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr7:96302200-96314200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:96302200-96314400	Weak transcription	Primary hematopoietic stem cells	blood

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