Variant report

Variant	rs10270175
Chromosome Location	chr7:96295937-96295938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226466	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234669	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10236162	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10242066	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10246774	1.00[EUR][1000 genomes]
rs10249910	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10252396	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10259875	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270486	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10273237	1.00[EUR][1000 genomes]
rs10276660	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278521	0.91[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1581538	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1608739	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17167680	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17167699	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17413240	0.93[EUR][1000 genomes]
rs17495340	0.86[EUR][1000 genomes]
rs1917482	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2140741	0.95[EUR][1000 genomes]
rs2272	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3942589	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs55902035	1.00[EUR][1000 genomes]
rs67368115	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67548673	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67658953	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228327	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228328	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228329	0.95[EUR][1000 genomes]
rs73228347	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228355	1.00[EUR][1000 genomes]
rs73228356	1.00[EUR][1000 genomes]
rs73228360	1.00[EUR][1000 genomes]
rs73228364	0.93[EUR][1000 genomes]
rs7341440	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs952005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:96258200-96299800	Weak transcription	Ovary	ovary
3	chr7:96266000-96301200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:96266600-96317000	Weak transcription	Right Ventricle	heart
5	chr7:96267600-96301400	Weak transcription	Aorta	Aorta
6	chr7:96272200-96301400	Weak transcription	Spleen	Spleen
7	chr7:96278400-96301400	Weak transcription	Psoas Muscle	Psoas
8	chr7:96284400-96320000	Weak transcription	Pancreas	Pancrea
9	chr7:96284400-96331200	Weak transcription	Lung	lung
10	chr7:96284600-96300200	Weak transcription	Fetal Stomach	stomach
11	chr7:96285600-96319800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:96286400-96308400	Weak transcription	Brain Anterior Caudate	brain
13	chr7:96287400-96296000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:96287400-96301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:96287800-96317000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:96288200-96311600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:96290600-96298000	Weak transcription	Liver	Liver
18	chr7:96291000-96302800	Weak transcription	Gastric	stomach
19	chr7:96291400-96299600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:96291400-96301400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:96291600-96314200	Weak transcription	Fetal Brain Male	brain
22	chr7:96291800-96300000	Weak transcription	Primary B cells from cord blood	blood
23	chr7:96292000-96299600	Weak transcription	Adipose Nuclei	Adipose
24	chr7:96292000-96303200	Weak transcription	Fetal Brain Female	brain
25	chr7:96292000-96308600	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:96292000-96320400	Weak transcription	HepG2	liver
27	chr7:96292200-96301400	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:96292200-96301400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:96292200-96301800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:96292600-96299000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:96292800-96299800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:96292800-96303200	Strong transcription	Left Ventricle	heart
33	chr7:96292800-96314400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:96293000-96299800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr7:96293000-96299800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:96293000-96300000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr7:96293000-96300000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr7:96293000-96301200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr7:96293000-96301400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:96293000-96306000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr7:96293000-96313200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr7:96293000-96317200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:96293000-96317200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:96293200-96304400	Weak transcription	Fetal Intestine Small	intestine
45	chr7:96293400-96301400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr7:96293400-96301400	Weak transcription	Thymus	Thymus
47	chr7:96293400-96313600	Weak transcription	GM12878-XiMat	blood
48	chr7:96293600-96296400	Weak transcription	Primary T cells from cord blood	blood
49	chr7:96293600-96297400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:96293600-96300800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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