Variant report

Variant	rs34622648
Chromosome Location	chr8:121671625-121671626
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121665347..121667970-chr8:121670841..121672355,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34519544	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870742	0.80[EUR][1000 genomes]
rs6469942	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821158	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr8:121645000-121673000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:121655800-121673000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:121658600-121678600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:121662200-121675000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:121662400-121673400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:121662800-121680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:121663000-121681200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:121663200-121672400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:121663600-121685000	Weak transcription	Aorta	Aorta
12	chr8:121664200-121671800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:121665800-121679400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:121667200-121672600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:121667400-121681000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:121667400-121690200	Weak transcription	Fetal Stomach	stomach
17	chr8:121668000-121672600	Weak transcription	Colon Smooth Muscle	Colon
18	chr8:121668200-121672800	Weak transcription	Adipose Nuclei	Adipose
19	chr8:121668200-121674800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:121668200-121680000	Weak transcription	Gastric	stomach
21	chr8:121668400-121672000	Weak transcription	Liver	Liver
22	chr8:121668400-121674000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr8:121668600-121672200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr8:121668600-121678400	Weak transcription	HSMMtube	muscle
25	chr8:121669000-121672200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:121669200-121672400	Weak transcription	HSMM	muscle
27	chr8:121669400-121678400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:121669600-121674800	Weak transcription	NHDF-Ad	bronchial
29	chr8:121669800-121671800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:121670000-121674800	Weak transcription	Osteobl	bone
31	chr8:121670400-121672200	Weak transcription	NHLF	lung
32	chr8:121670800-121672000	Weak transcription	Fetal Lung	lung
33	chr8:121671000-121671800	Weak transcription	HepG2	liver
34	chr8:121671200-121674000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr8:121671600-121672200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:121671600-121672600	ZNF genes & repeats	Fetal Kidney	kidney

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