Variant report

Variant	rs4870742
Chromosome Location	chr8:121676913-121676914
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121676047..121678791-chr8:121679807..121682137,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11783798	0.89[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11993445	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs34245253	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34519544	0.81[EUR][1000 genomes]
rs34622648	0.80[EUR][1000 genomes]
rs35780243	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4076711	0.95[JPT][hapmap]
rs4077726	0.95[JPT][hapmap]
rs4307384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4360333	0.89[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4361791	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4366115	0.95[JPT][hapmap]
rs4392948	0.95[JPT][hapmap]
rs4512418	0.89[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4871092	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871093	0.95[ASN][1000 genomes]
rs5003013	0.95[JPT][hapmap]
rs59486364	0.93[ASN][1000 genomes]
rs6469942	0.88[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs66856703	0.92[ASN][1000 genomes]
rs6986798	0.95[JPT][hapmap]
rs6987331	0.89[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6987352	0.90[JPT][hapmap]
rs6995376	0.82[LWK][hapmap]
rs7015906	0.80[EUR][1000 genomes]
rs7818703	0.85[CHD][hapmap]
rs7821158	0.82[GIH][hapmap]
rs7828909	0.95[JPT][hapmap]
rs7831002	0.80[EUR][1000 genomes]
rs7837985	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121658600-121678600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr8:121662800-121680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:121663000-121681200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:121663600-121685000	Weak transcription	Aorta	Aorta
5	chr8:121665800-121679400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:121667400-121681000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:121667400-121690200	Weak transcription	Fetal Stomach	stomach
8	chr8:121668200-121680000	Weak transcription	Gastric	stomach
9	chr8:121668600-121678400	Weak transcription	HSMMtube	muscle
10	chr8:121669400-121678400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:121672600-121678200	Weak transcription	Primary T cells from cord blood	blood
12	chr8:121672600-121690400	Weak transcription	Fetal Kidney	kidney
13	chr8:121672600-121699600	Weak transcription	HSMM	muscle
14	chr8:121673000-121678200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:121673200-121684800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:121673400-121678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:121673400-121678400	Weak transcription	Liver	Liver
18	chr8:121674000-121678200	Weak transcription	Primary B cells from cord blood	blood
19	chr8:121674000-121678400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:121674200-121681000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:121675000-121677000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:121675000-121677800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:121675000-121680400	Weak transcription	Osteobl	bone
24	chr8:121675200-121678200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:121675600-121680600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:121676000-121678400	Strong transcription	HepG2	liver
27	chr8:121676000-121678600	Weak transcription	Psoas Muscle	Psoas

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