Variant report

Variant	rs4366115
Chromosome Location	chr8:121683325-121683326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11783798	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11993445	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4076711	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4077726	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4077727	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4307384	0.95[JPT][hapmap]
rs4360333	0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4361791	0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4392948	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4484738	1.00[YRI][hapmap]
rs4512418	0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4515598	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4607661	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870742	0.95[JPT][hapmap]
rs4871093	0.82[EUR][1000 genomes]
rs4871095	1.00[YRI][hapmap]
rs5003013	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59486364	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6469944	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66856703	0.81[ASN][1000 genomes]
rs6986798	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6987331	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6987352	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995596	1.00[YRI][hapmap]
rs7828909	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7837985	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7842679	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121663600-121685000	Weak transcription	Aorta	Aorta
2	chr8:121667400-121690200	Weak transcription	Fetal Stomach	stomach
3	chr8:121672600-121690400	Weak transcription	Fetal Kidney	kidney
4	chr8:121672600-121699600	Weak transcription	HSMM	muscle
5	chr8:121673200-121684800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:121678000-121685400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:121679000-121684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr8:121679000-121685800	Weak transcription	Psoas Muscle	Psoas
9	chr8:121679200-121685000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:121679200-121685000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr8:121679200-121686200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:121679600-121684800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr8:121679600-121685000	Weak transcription	Lung	lung
14	chr8:121679800-121714600	Weak transcription	Spleen	Spleen
15	chr8:121680000-121684000	Strong transcription	Primary T cells from cord blood	blood
16	chr8:121680600-121685200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr8:121680600-121697600	Weak transcription	Gastric	stomach
18	chr8:121680600-121704600	Weak transcription	Fetal Intestine Large	intestine
19	chr8:121680800-121701000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:121681400-121684800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr8:121681400-121685000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:121681400-121685000	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:121681400-121704200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:121681600-121685800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:121681600-121686000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:121681600-121686200	Weak transcription	HSMMtube	muscle
27	chr8:121681600-121690400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:121681600-121699600	Weak transcription	Osteobl	bone
29	chr8:121681600-121701000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:121681800-121684600	Weak transcription	NHLF	lung
31	chr8:121682200-121686400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:121682200-121690400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:121682200-121700400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr8:121682600-121684400	Enhancers	Liver	Liver
35	chr8:121682600-121685200	Weak transcription	NHDF-Ad	bronchial
36	chr8:121682800-121685000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:121682800-121698000	Weak transcription	Primary B cells from cord blood	blood
38	chr8:121683000-121684400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:121683000-121685200	Genic enhancers	HepG2	liver
40	chr8:121683000-121686200	Strong transcription	Primary hematopoietic stem cells	blood
41	chr8:121683200-121684800	Weak transcription	Monocytes-CD14+_RO01746	blood

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