Variant report

Variant	rs35780243
Chromosome Location	chr8:121679639-121679640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11783798	0.93[ASN][1000 genomes]
rs11993445	0.93[ASN][1000 genomes]
rs34245253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307384	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4360333	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4361791	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4512418	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4870742	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871092	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871093	0.96[ASN][1000 genomes]
rs59486364	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66856703	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6987331	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121662800-121680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:121663000-121681200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:121663600-121685000	Weak transcription	Aorta	Aorta
4	chr8:121667400-121681000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:121667400-121690200	Weak transcription	Fetal Stomach	stomach
6	chr8:121668200-121680000	Weak transcription	Gastric	stomach
7	chr8:121672600-121690400	Weak transcription	Fetal Kidney	kidney
8	chr8:121672600-121699600	Weak transcription	HSMM	muscle
9	chr8:121673200-121684800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:121674200-121681000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:121675000-121680400	Weak transcription	Osteobl	bone
12	chr8:121675600-121680600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:121678000-121681400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:121678000-121685400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:121678400-121680600	ZNF genes & repeats	HepG2	liver
16	chr8:121678400-121683000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr8:121678600-121680400	Weak transcription	HSMMtube	muscle
18	chr8:121678600-121680800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:121678800-121680000	Weak transcription	Liver	Liver
20	chr8:121679000-121680000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:121679000-121680800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:121679000-121684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr8:121679000-121685800	Weak transcription	Psoas Muscle	Psoas
24	chr8:121679200-121679800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:121679200-121680000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr8:121679200-121680200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr8:121679200-121685000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr8:121679200-121685000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr8:121679200-121686200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:121679400-121680000	Weak transcription	Primary T cells from cord blood	blood
31	chr8:121679400-121680600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:121679400-121681400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr8:121679600-121684800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr8:121679600-121685000	Weak transcription	Lung	lung

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