Variant report
| Variant | rs34635 |
|---|---|
| Chromosome Location | chr5:60513501-60513502 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NDUFAF2-5 | chr5:60513494-60513754 | l_2926_chr5:60494163-60513754_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10055076 | 0.81[ASN][1000 genomes] |
| rs10069718 | 0.93[ASN][1000 genomes] |
| rs10076568 | 0.87[JPT][hapmap] |
| rs11745179 | 0.88[ASN][1000 genomes] |
| rs11745233 | 0.88[ASN][1000 genomes] |
| rs11745696 | 0.94[ASN][1000 genomes] |
| rs11750566 | 0.94[ASN][1000 genomes] |
| rs11954384 | 0.97[ASN][1000 genomes] |
| rs12516321 | 0.84[MEX][hapmap] |
| rs13181515 | 0.87[ASN][1000 genomes] |
| rs13181517 | 0.87[ASN][1000 genomes] |
| rs13183007 | 0.90[ASN][1000 genomes] |
| rs13183464 | 0.87[ASN][1000 genomes] |
| rs159365 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs171748 | 0.81[EUR][1000 genomes] |
| rs28409386 | 0.93[ASN][1000 genomes] |
| rs34598 | 0.81[JPT][hapmap] |
| rs35185283 | 0.88[ASN][1000 genomes] |
| rs767634 | 0.81[JPT][hapmap] |
| rs9291707 | 0.87[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034038 | chr5:60375328-60607654 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv1028884 | chr5:60414723-60732779 | Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs34635 | ERCC8 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
