Variant report

Variant	rs34655563
Chromosome Location	chrX:22260022-22260023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10086600	0.82[ASN][1000 genomes]
rs10089761	0.82[ASN][1000 genomes]
rs10102314	0.83[ASN][1000 genomes]
rs10866979	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11136830	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11776465	0.82[ASN][1000 genomes]
rs11776699	0.88[ASN][1000 genomes]
rs11785887	0.82[ASN][1000 genomes]
rs11985826	0.87[ASN][1000 genomes]
rs12544495	0.92[ASN][1000 genomes]
rs12545609	0.84[ASN][1000 genomes]
rs13248751	0.81[ASN][1000 genomes]
rs13253601	0.83[ASN][1000 genomes]
rs13254213	0.84[ASN][1000 genomes]
rs13257156	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13274407	0.83[ASN][1000 genomes]
rs13276671	0.83[ASN][1000 genomes]
rs13279768	0.83[ASN][1000 genomes]
rs13281229	0.83[ASN][1000 genomes]
rs28690269	0.82[ASN][1000 genomes]
rs28845835	0.83[ASN][1000 genomes]
rs35047891	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4398942	0.83[ASN][1000 genomes]
rs4415343	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4445246	0.83[ASN][1000 genomes]
rs4469475	0.82[ASN][1000 genomes]
rs4629891	0.81[ASN][1000 genomes]
rs56265039	0.83[ASN][1000 genomes]
rs60747364	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6558974	0.80[ASN][1000 genomes]
rs6558976	0.85[ASN][1000 genomes]
rs6981364	0.81[ASN][1000 genomes]
rs6982689	0.83[ASN][1000 genomes]
rs6983804	0.82[ASN][1000 genomes]
rs6984042	0.82[ASN][1000 genomes]
rs6984641	0.82[ASN][1000 genomes]
rs6988886	0.83[ASN][1000 genomes]
rs6989785	0.82[ASN][1000 genomes]
rs6989820	0.82[ASN][1000 genomes]
rs6994210	0.82[ASN][1000 genomes]
rs6995257	0.87[ASN][1000 genomes]
rs6995685	0.83[ASN][1000 genomes]
rs6998734	0.83[ASN][1000 genomes]
rs6998740	0.87[ASN][1000 genomes]
rs7000861	0.81[ASN][1000 genomes]
rs7001380	0.83[ASN][1000 genomes]
rs7003519	0.82[ASN][1000 genomes]
rs7004611	0.92[ASN][1000 genomes]
rs7004624	0.92[ASN][1000 genomes]
rs7005357	0.82[ASN][1000 genomes]
rs7006470	0.82[ASN][1000 genomes]
rs7011574	0.81[ASN][1000 genomes]
rs7011604	0.83[ASN][1000 genomes]
rs7012448	0.83[ASN][1000 genomes]
rs7012456	0.82[ASN][1000 genomes]
rs7013098	0.84[ASN][1000 genomes]
rs7014819	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7014966	0.83[ASN][1000 genomes]
rs7460158	0.84[ASN][1000 genomes]
rs7822175	0.88[ASN][1000 genomes]
rs7822176	0.84[ASN][1000 genomes]
rs7822294	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7833925	0.82[ASN][1000 genomes]
rs7838077	0.82[ASN][1000 genomes]
rs7839924	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918052	chrX:22001798-22965629	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2830436	chrX:22046859-22841491	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv521384	chrX:22216767-22971444	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:22260000-22265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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