Variant report

Variant	rs11776699
Chromosome Location	chr10:57848144-57848145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10086600	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10089761	0.91[ASN][1000 genomes]
rs10102314	0.81[ASN][1000 genomes]
rs10866979	0.86[ASN][1000 genomes]
rs11136830	0.86[ASN][1000 genomes]
rs11776465	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11778303	0.87[EUR][1000 genomes]
rs11780876	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11785887	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11985826	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12544495	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12545609	0.82[ASN][1000 genomes]
rs13253601	0.82[ASN][1000 genomes]
rs13254213	0.82[ASN][1000 genomes]
rs13257156	0.86[ASN][1000 genomes]
rs13274407	0.81[ASN][1000 genomes]
rs13276671	0.81[ASN][1000 genomes]
rs13279768	0.82[ASN][1000 genomes]
rs13281229	0.82[ASN][1000 genomes]
rs28690269	0.92[ASN][1000 genomes]
rs28845835	0.83[ASN][1000 genomes]
rs34655563	0.88[ASN][1000 genomes]
rs35047891	0.91[ASN][1000 genomes]
rs4394420	0.89[ASN][1000 genomes]
rs4398942	0.81[ASN][1000 genomes]
rs4415343	0.86[ASN][1000 genomes]
rs4445246	0.81[ASN][1000 genomes]
rs4469475	0.80[ASN][1000 genomes]
rs4610773	0.88[ASN][1000 genomes]
rs4629891	0.91[ASN][1000 genomes]
rs56265039	0.82[ASN][1000 genomes]
rs60747364	0.86[ASN][1000 genomes]
rs6558974	0.90[ASN][1000 genomes]
rs6558976	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6558977	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6558978	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6982689	0.81[ASN][1000 genomes]
rs6983804	0.91[ASN][1000 genomes]
rs6984042	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6984641	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6988886	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6989785	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6989820	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994210	0.91[ASN][1000 genomes]
rs6995257	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6995685	0.83[ASN][1000 genomes]
rs6998734	0.83[ASN][1000 genomes]
rs6998740	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001380	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7003519	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7004611	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7004624	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7005357	0.92[ASN][1000 genomes]
rs7006470	0.92[ASN][1000 genomes]
rs7011574	0.89[ASN][1000 genomes]
rs7011604	0.81[ASN][1000 genomes]
rs7012448	0.81[ASN][1000 genomes]
rs7012456	0.91[ASN][1000 genomes]
rs7013098	0.82[ASN][1000 genomes]
rs7014819	0.90[ASN][1000 genomes]
rs7014966	0.83[ASN][1000 genomes]
rs7460158	0.82[ASN][1000 genomes]
rs7822175	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7822176	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7822294	0.90[ASN][1000 genomes]
rs7833925	0.92[ASN][1000 genomes]
rs7838077	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7839924	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040047	chr10:57007182-57979747	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1051512	chr10:57470352-58026988	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540645	chr10:57470352-58026988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv971885	chr10:57727587-57893001	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv895501	chr10:57736009-57928768	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv895502	chr10:57747976-58099085	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2750966	chr10:57754594-58023394	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv467257	chr10:57841516-57966330	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv551056	chr10:57841516-57966330	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57826600-57850600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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