Variant report

Variant	rs34658417
Chromosome Location	chr7:47687442-47687443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:47685575..47687990-chr7:47705109..47707807,2	MCF-7	breast:
2	chr7:47687164..47688897-chr7:47693209..47694904,2	MCF-7	breast:
3	chr7:47687322..47690027-chr7:47714537..47716150,2	MCF-7	breast:
4	chr7:47681304..47684900-chr7:47685639..47688597,3	MCF-7	breast:
5	chr7:47672920..47677913-chr7:47686931..47690412,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221845	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11761007	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2347990	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720604	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4724605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4724609	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6968969	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs921576	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47685600-47688200	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:47685800-47687800	Enhancers	Placenta	Placenta
3	chr7:47685800-47688200	Enhancers	Fetal Intestine Large	intestine
4	chr7:47686200-47687600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr7:47686200-47687600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:47686200-47688000	Enhancers	Primary B cells from cord blood	blood
7	chr7:47686200-47688200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:47686200-47688200	Enhancers	Fetal Thymus	thymus
9	chr7:47686200-47688800	Enhancers	Primary hematopoietic stem cells	blood
10	chr7:47686200-47690600	Enhancers	A549	lung
11	chr7:47686400-47687600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:47686400-47687800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr7:47686400-47687800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr7:47686400-47688000	Enhancers	Primary T cells from cord blood	blood
15	chr7:47686400-47688000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:47686400-47688400	Enhancers	Fetal Muscle Leg	muscle
17	chr7:47686400-47688800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:47686600-47687600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr7:47686600-47687600	Enhancers	Fetal Intestine Small	intestine
20	chr7:47686600-47687800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr7:47686600-47687800	Enhancers	Liver	Liver
22	chr7:47686600-47688000	Enhancers	Fetal Stomach	stomach
23	chr7:47686600-47688000	Enhancers	Right Atrium	heart
24	chr7:47686600-47688000	Enhancers	Thymus	Thymus
25	chr7:47686600-47688200	Enhancers	Fetal Heart	heart
26	chr7:47686800-47687600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:47686800-47687600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:47686800-47687800	Enhancers	Colon Smooth Muscle	Colon
29	chr7:47686800-47688000	Enhancers	Adipose Nuclei	Adipose
30	chr7:47686800-47689400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:47687000-47687600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:47687000-47687600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:47687000-47688000	Enhancers	Spleen	Spleen
34	chr7:47687000-47689800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:47687000-47691800	Enhancers	HSMMtube	muscle
36	chr7:47687200-47687600	Flanking Active TSS	Fetal Lung	lung
37	chr7:47687200-47688000	Weak transcription	NHLF	lung
38	chr7:47687200-47688200	Enhancers	Fetal Kidney	kidney
39	chr7:47687200-47689000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr7:47687200-47689200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:47687200-47689200	Enhancers	Osteobl	bone
42	chr7:47687200-47689600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:47687200-47689800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:47687200-47693200	Weak transcription	Left Ventricle	heart
45	chr7:47687200-47693600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:47687200-47695000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:47687400-47688200	Enhancers	HepG2	liver
48	chr7:47687400-47688800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:47687400-47688800	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr7:47687400-47689600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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