Variant report

Variant	rs4724605
Chromosome Location	chr7:47686314-47686315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47685575..47687990-chr7:47705109..47707807,2	MCF-7	breast:
2	chr7:47681304..47684900-chr7:47685639..47688597,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11761007	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2347990	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34658417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720604	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4724609	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6968969	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs921576	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47676000-47686600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:47676800-47686800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:47677000-47687000	Weak transcription	NHLF	lung
4	chr7:47678600-47687000	Weak transcription	Spleen	Spleen
5	chr7:47680800-47686400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:47680800-47686600	Weak transcription	Fetal Heart	heart
7	chr7:47681200-47686600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:47681400-47686600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:47681600-47686600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:47681800-47687200	Weak transcription	Osteobl	bone
11	chr7:47685000-47686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:47685600-47686800	Enhancers	HepG2	liver
13	chr7:47685600-47688200	Enhancers	Primary B cells from peripheral blood	blood
14	chr7:47685800-47687000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:47685800-47687800	Enhancers	Placenta	Placenta
16	chr7:47685800-47688200	Enhancers	Fetal Intestine Large	intestine
17	chr7:47686200-47687000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:47686200-47687600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr7:47686200-47687600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:47686200-47688000	Enhancers	Primary B cells from cord blood	blood
21	chr7:47686200-47688200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:47686200-47688200	Enhancers	Fetal Thymus	thymus
23	chr7:47686200-47688800	Enhancers	Primary hematopoietic stem cells	blood
24	chr7:47686200-47690600	Enhancers	A549	lung

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