Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177520133..177522867-chr2:177524525..177526296,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTX2-1	chr2:177520426-177520707	XLOC_001765
2	lnc-MTX2-1	chr2:177520426-177520686	NONHSAT075663
3	lnc-MTX2-1	chr2:177520186-177521042	NONHSAT075665

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10179687	0.82[EUR][1000 genomes]
rs10210519	0.81[EUR][1000 genomes]
rs1054978	0.84[EUR][1000 genomes]
rs12467496	0.83[EUR][1000 genomes]
rs12617412	0.82[EUR][1000 genomes]
rs13019019	0.83[EUR][1000 genomes]
rs13395810	0.83[EUR][1000 genomes]
rs1562611	0.84[EUR][1000 genomes]
rs17411687	0.84[EUR][1000 genomes]
rs17610485	0.82[EUR][1000 genomes]
rs1868340	0.83[EUR][1000 genomes]
rs1975589	0.84[EUR][1000 genomes]
rs35704455	0.83[EUR][1000 genomes]
rs4893911	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4893912	0.84[EUR][1000 genomes]
rs4893914	0.82[EUR][1000 genomes]
rs4894189	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4894190	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6433602	0.84[EUR][1000 genomes]
rs6753693	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6760357	0.82[EUR][1000 genomes]
rs7585434	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177516200-177536400	Weak transcription	Ovary	ovary
2	chr2:177517200-177521800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:177519000-177522200	Weak transcription	Fetal Kidney	kidney
4	chr2:177519400-177521800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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