Variant report

Variant	rs13019019
Chromosome Location	chr2:177536629-177536630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177535363..177538180-chr2:177540351..177541959,2	MCF-7	breast:
2	chr2:177535397..177538319-chr2:177538873..177541835,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10179687	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10199487	0.83[EUR][1000 genomes]
rs10202251	0.99[ASN][1000 genomes]
rs10210519	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1054978	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11695305	0.99[ASN][1000 genomes]
rs12467496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12616772	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12617412	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12693096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13395810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428659	1.00[ASN][1000 genomes]
rs1448519	0.96[ASN][1000 genomes]
rs1562608	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs1562611	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16864180	1.00[ASN][1000 genomes]
rs17411687	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17610485	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1868340	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975589	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2029041	0.93[ASN][1000 genomes]
rs2362866	0.99[ASN][1000 genomes]
rs2594947	0.97[ASN][1000 genomes]
rs2594948	0.96[ASN][1000 genomes]
rs2594950	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs2710024	1.00[ASN][1000 genomes]
rs34664243	0.83[EUR][1000 genomes]
rs35704455	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4606966	0.97[ASN][1000 genomes]
rs4893911	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4893912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4893914	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4894189	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4894190	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4894191	0.99[ASN][1000 genomes]
rs4894192	0.94[ASN][1000 genomes]
rs6433602	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6718739	1.00[ASN][1000 genomes]
rs6740315	0.97[ASN][1000 genomes]
rs6753693	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6760357	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72930221	0.96[ASN][1000 genomes]
rs7585434	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13019019	KIAA1715	cis	cerebellum	SCAN
rs13019019	SP9	cis	parietal	SCAN
rs13019019	OSBPL6	cis	cerebellum	SCAN
rs13019019	SP9	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177533600-177537000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:177534600-177536800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:177534600-177540400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:177534800-177537600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:177534800-177537600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:177534800-177538000	Weak transcription	Fetal Heart	heart
7	chr2:177534800-177538200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:177534800-177540400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:177534800-177540400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:177534800-177540800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:177534800-177543600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:177534800-177545600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:177535000-177540400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:177536000-177540600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:177536400-177536800	Enhancers	Ovary	ovary
16	chr2:177536600-177539400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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