Variant report
Variant | rs16864180 |
---|---|
Chromosome Location | chr2:177530997-177530998 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10179687 | 0.97[ASN][1000 genomes] |
rs10202251 | 0.99[ASN][1000 genomes] |
rs10210519 | 0.97[ASN][1000 genomes] |
rs1054978 | 0.97[ASN][1000 genomes] |
rs11695305 | 0.99[ASN][1000 genomes] |
rs12467496 | 1.00[ASN][1000 genomes] |
rs12616772 | 1.00[ASN][1000 genomes] |
rs12617412 | 0.99[ASN][1000 genomes] |
rs12693096 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs13019019 | 1.00[ASN][1000 genomes] |
rs13395810 | 1.00[ASN][1000 genomes] |
rs13428659 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1448519 | 0.96[ASN][1000 genomes] |
rs1562608 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1562611 | 0.99[ASN][1000 genomes] |
rs17411687 | 0.83[ASN][1000 genomes] |
rs17610485 | 0.99[ASN][1000 genomes] |
rs1868340 | 1.00[ASN][1000 genomes] |
rs1975589 | 0.99[ASN][1000 genomes] |
rs2029041 | 0.93[ASN][1000 genomes] |
rs2362866 | 0.99[ASN][1000 genomes] |
rs2594947 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2594948 | 0.96[ASN][1000 genomes] |
rs2594950 | 1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes] |
rs2710024 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35704455 | 1.00[ASN][1000 genomes] |
rs4606966 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4893911 | 0.97[ASN][1000 genomes] |
rs4893912 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes] |
rs4893914 | 0.99[ASN][1000 genomes] |
rs4894189 | 0.97[ASN][1000 genomes] |
rs4894190 | 0.97[ASN][1000 genomes] |
rs4894191 | 0.99[ASN][1000 genomes] |
rs4894192 | 0.94[ASN][1000 genomes] |
rs6433602 | 0.81[ASN][1000 genomes] |
rs6718739 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6740315 | 0.97[ASN][1000 genomes] |
rs6753693 | 0.97[ASN][1000 genomes] |
rs6760357 | 0.97[ASN][1000 genomes] |
rs72930221 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7585434 | 0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834464 | chr2:177375743-177534410 | Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 15 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:177516200-177536400 | Weak transcription | Ovary | ovary |
2 | chr2:177528600-177533800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
3 | chr2:177530000-177533800 | Weak transcription | Fetal Kidney | kidney |