Variant report
| Variant | rs2594948 |
|---|---|
| Chromosome Location | chr2:177526156-177526157 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:177520133..177522867-chr2:177524525..177526296,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10179687 | 0.94[ASN][1000 genomes] |
| rs10202251 | 0.97[ASN][1000 genomes] |
| rs10210519 | 0.96[ASN][1000 genomes] |
| rs1054978 | 0.96[ASN][1000 genomes] |
| rs11695305 | 0.95[ASN][1000 genomes] |
| rs12467496 | 0.96[ASN][1000 genomes] |
| rs12616772 | 0.96[ASN][1000 genomes] |
| rs12617412 | 0.95[ASN][1000 genomes] |
| rs12693096 | 0.96[ASN][1000 genomes] |
| rs13019019 | 0.96[ASN][1000 genomes] |
| rs13395810 | 0.96[ASN][1000 genomes] |
| rs13428659 | 0.96[ASN][1000 genomes] |
| rs1448519 | 0.95[ASN][1000 genomes] |
| rs1562608 | 0.96[ASN][1000 genomes] |
| rs1562611 | 0.95[ASN][1000 genomes] |
| rs16864180 | 0.96[ASN][1000 genomes] |
| rs17411687 | 0.80[ASN][1000 genomes] |
| rs17610485 | 0.95[ASN][1000 genomes] |
| rs1868340 | 0.96[ASN][1000 genomes] |
| rs1975589 | 0.95[ASN][1000 genomes] |
| rs2029041 | 0.91[ASN][1000 genomes] |
| rs2362866 | 0.95[ASN][1000 genomes] |
| rs2594947 | 0.96[ASN][1000 genomes] |
| rs2594950 | 0.86[ASN][1000 genomes] |
| rs2710024 | 0.96[ASN][1000 genomes] |
| rs35704455 | 0.96[ASN][1000 genomes] |
| rs4606966 | 0.94[ASN][1000 genomes] |
| rs4893911 | 0.96[ASN][1000 genomes] |
| rs4893912 | 0.96[ASN][1000 genomes] |
| rs4893914 | 0.95[ASN][1000 genomes] |
| rs4894189 | 0.96[ASN][1000 genomes] |
| rs4894190 | 0.96[ASN][1000 genomes] |
| rs4894191 | 0.95[ASN][1000 genomes] |
| rs4894192 | 0.90[ASN][1000 genomes] |
| rs6718739 | 0.96[ASN][1000 genomes] |
| rs6740315 | 0.96[ASN][1000 genomes] |
| rs6753693 | 0.96[ASN][1000 genomes] |
| rs6760357 | 0.96[ASN][1000 genomes] |
| rs72930221 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834464 | chr2:177375743-177534410 | Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177516200-177536400 | Weak transcription | Ovary | ovary |
| 2 | chr2:177524800-177529200 | Weak transcription | Fetal Kidney | kidney |
| 3 | chr2:177525800-177527200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
