Variant report

Variant	rs2710024
Chromosome Location	chr2:177532212-177532213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10179687	0.97[ASN][1000 genomes]
rs10202251	0.99[ASN][1000 genomes]
rs10210519	0.97[ASN][1000 genomes]
rs1054978	0.97[ASN][1000 genomes]
rs11695305	0.99[ASN][1000 genomes]
rs12467496	1.00[ASN][1000 genomes]
rs12616772	1.00[ASN][1000 genomes]
rs12617412	0.99[ASN][1000 genomes]
rs12693096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13019019	1.00[ASN][1000 genomes]
rs13395810	1.00[ASN][1000 genomes]
rs13428659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448519	0.96[ASN][1000 genomes]
rs1562608	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1562611	0.99[ASN][1000 genomes]
rs16864180	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17411687	0.83[ASN][1000 genomes]
rs17610485	0.99[ASN][1000 genomes]
rs1868340	1.00[ASN][1000 genomes]
rs1975589	0.99[ASN][1000 genomes]
rs2029041	0.93[ASN][1000 genomes]
rs2362866	0.99[ASN][1000 genomes]
rs2594947	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2594948	0.96[ASN][1000 genomes]
rs2594950	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs35704455	1.00[ASN][1000 genomes]
rs4606966	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4893911	0.97[ASN][1000 genomes]
rs4893912	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs4893914	0.99[ASN][1000 genomes]
rs4894189	0.97[ASN][1000 genomes]
rs4894190	0.97[ASN][1000 genomes]
rs4894191	0.99[ASN][1000 genomes]
rs4894192	0.94[ASN][1000 genomes]
rs6433602	0.81[ASN][1000 genomes]
rs6718739	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740315	0.97[ASN][1000 genomes]
rs6753693	0.97[ASN][1000 genomes]
rs6760357	0.97[ASN][1000 genomes]
rs72930221	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7585434	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177516200-177536400	Weak transcription	Ovary	ovary
2	chr2:177528600-177533800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:177530000-177533800	Weak transcription	Fetal Kidney	kidney

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