Variant report

Variant	rs4894192
Chromosome Location	chr2:177544551-177544552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10179687	0.94[ASN][1000 genomes]
rs10202251	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10210519	0.91[ASN][1000 genomes]
rs1054978	0.91[ASN][1000 genomes]
rs11695305	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12467496	0.94[ASN][1000 genomes]
rs12616772	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12617412	0.93[ASN][1000 genomes]
rs12693096	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13019019	0.94[ASN][1000 genomes]
rs13395810	0.94[ASN][1000 genomes]
rs13428659	0.94[ASN][1000 genomes]
rs1448519	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1562608	0.92[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1562611	0.93[ASN][1000 genomes]
rs16864180	0.94[ASN][1000 genomes]
rs17610485	0.93[ASN][1000 genomes]
rs1868340	0.94[ASN][1000 genomes]
rs1975589	0.93[ASN][1000 genomes]
rs2029041	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2362866	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2594947	0.91[ASN][1000 genomes]
rs2594948	0.90[ASN][1000 genomes]
rs2594950	0.92[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2710024	0.94[ASN][1000 genomes]
rs35704455	0.94[ASN][1000 genomes]
rs4606966	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4893911	0.91[ASN][1000 genomes]
rs4893912	0.92[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4893914	0.93[ASN][1000 genomes]
rs4894189	0.91[ASN][1000 genomes]
rs4894190	0.91[ASN][1000 genomes]
rs4894191	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6718739	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6740315	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6753693	0.91[ASN][1000 genomes]
rs6760357	0.91[ASN][1000 genomes]
rs72930221	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177534800-177545600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:177537000-177545200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:177541000-177544600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:177542200-177547200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:177543400-177544600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:177543400-177544800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:177543600-177545400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:177543800-177544600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:177543800-177544600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:177543800-177545200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:177543800-177547400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:177544000-177552400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:177544200-177547200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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