Variant report

Variant	rs12693096
Chromosome Location	chr2:177528535-177528536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10179687	0.95[ASN][1000 genomes]
rs10202251	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10210519	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1054978	1.00[ASN][1000 genomes]
rs11695305	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12467496	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12616772	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12617412	0.96[ASN][1000 genomes]
rs13019019	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13395810	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13428659	0.97[ASN][1000 genomes]
rs1448519	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1562608	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562611	0.96[ASN][1000 genomes]
rs16864180	0.97[ASN][1000 genomes]
rs17411687	0.81[ASN][1000 genomes]
rs17610485	0.96[ASN][1000 genomes]
rs1868340	0.97[ASN][1000 genomes]
rs1975589	0.99[ASN][1000 genomes]
rs2029041	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2362866	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2594947	0.97[ASN][1000 genomes]
rs2594948	0.96[ASN][1000 genomes]
rs2594950	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2710024	0.97[ASN][1000 genomes]
rs35704455	0.97[ASN][1000 genomes]
rs4606966	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4893911	1.00[ASN][1000 genomes]
rs4893912	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs4893914	0.96[ASN][1000 genomes]
rs4894189	1.00[ASN][1000 genomes]
rs4894190	1.00[ASN][1000 genomes]
rs4894191	0.96[ASN][1000 genomes]
rs4894192	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6433602	0.82[ASN][1000 genomes]
rs6718739	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6740315	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753693	1.00[ASN][1000 genomes]
rs6760357	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72930221	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7585434	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177516200-177536400	Weak transcription	Ovary	ovary
2	chr2:177524800-177529200	Weak transcription	Fetal Kidney	kidney
3	chr2:177528400-177528600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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