Variant report

Variant	rs4606966
Chromosome Location	chr2:177542723-177542724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177541126..177544092-chr2:177546017..177548912,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10179687	1.00[ASN][1000 genomes]
rs10202251	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10210519	0.95[ASN][1000 genomes]
rs1054978	0.95[ASN][1000 genomes]
rs11695305	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12467496	0.97[ASN][1000 genomes]
rs12616772	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12617412	0.99[ASN][1000 genomes]
rs12693096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13019019	0.97[ASN][1000 genomes]
rs13395810	0.97[ASN][1000 genomes]
rs13428659	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1448519	0.94[ASN][1000 genomes]
rs1562608	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1562611	0.99[ASN][1000 genomes]
rs16864180	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17411687	0.83[ASN][1000 genomes]
rs17610485	0.99[ASN][1000 genomes]
rs1868340	0.97[ASN][1000 genomes]
rs1975589	0.96[ASN][1000 genomes]
rs2029041	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2362866	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2594947	0.95[ASN][1000 genomes]
rs2594948	0.94[ASN][1000 genomes]
rs2594950	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2710024	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35704455	0.97[ASN][1000 genomes]
rs4893911	0.95[ASN][1000 genomes]
rs4893912	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4893914	0.99[ASN][1000 genomes]
rs4894189	0.95[ASN][1000 genomes]
rs4894190	0.95[ASN][1000 genomes]
rs4894191	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4894192	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6718739	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6740315	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6753693	0.95[ASN][1000 genomes]
rs6760357	0.95[ASN][1000 genomes]
rs72930221	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177534800-177543600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:177534800-177545600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:177537000-177545200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:177540800-177543400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:177540800-177543600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:177541000-177543400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:177541000-177543400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:177541000-177543800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:177541000-177544600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:177541200-177543800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:177541200-177543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:177541400-177543400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:177542200-177547200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:177542600-177544000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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