Variant report

Variant	rs2029041
Chromosome Location	chr2:177518848-177518849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:177518427..177519228-chr2:177679235..177679802,3	MCF-7	breast:
2	chr2:177509574..177513874-chr2:177513908..177519452,7	MCF-7	breast:
3	chr2:177508809..177511243-chr2:177517580..177519321,2	K562	blood:
4	chr2:177518336..177518879-chr2:177679032..177679756,2	MCF-7	breast:
5	chr2:177517363..177518895-chr2:177675170..177677117,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10179687	0.90[ASN][1000 genomes]
rs10202251	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210519	0.95[ASN][1000 genomes]
rs1054978	0.95[ASN][1000 genomes]
rs11695305	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12467496	0.93[ASN][1000 genomes]
rs12616772	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12617412	0.91[ASN][1000 genomes]
rs12693096	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13019019	0.93[ASN][1000 genomes]
rs13395810	0.93[ASN][1000 genomes]
rs13428659	0.93[ASN][1000 genomes]
rs1448519	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1562608	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1562611	0.91[ASN][1000 genomes]
rs16864180	0.93[ASN][1000 genomes]
rs17610485	0.91[ASN][1000 genomes]
rs1868340	0.93[ASN][1000 genomes]
rs1975589	0.94[ASN][1000 genomes]
rs2362866	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2594947	0.93[ASN][1000 genomes]
rs2594948	0.91[ASN][1000 genomes]
rs2594950	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2710024	0.93[ASN][1000 genomes]
rs35704455	0.93[ASN][1000 genomes]
rs4606966	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4893911	0.95[ASN][1000 genomes]
rs4893912	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs4893914	0.91[ASN][1000 genomes]
rs4894189	0.95[ASN][1000 genomes]
rs4894190	0.95[ASN][1000 genomes]
rs4894191	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4894192	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6718739	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6740315	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6753693	0.95[ASN][1000 genomes]
rs6760357	0.95[ASN][1000 genomes]
rs72930221	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177516200-177536400	Weak transcription	Ovary	ovary
2	chr2:177517200-177521800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:177518000-177519000	Enhancers	Colon Smooth Muscle	Colon
4	chr2:177518200-177519000	Enhancers	Fetal Kidney	kidney
5	chr2:177518200-177519200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:177518200-177519400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:177518200-177519600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:177518200-177519600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:177518400-177519000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr2:177518400-177519000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:177518400-177519000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:177518400-177519000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:177518400-177519000	Enhancers	Fetal Heart	heart
14	chr2:177518400-177519000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr2:177518400-177519000	Enhancers	A549	lung
16	chr2:177518400-177519000	Enhancers	HUVEC	blood vessel
17	chr2:177518400-177519200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr2:177518400-177519200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:177518400-177519200	Enhancers	Brain Anterior Caudate	brain
20	chr2:177518600-177519000	Enhancers	Primary B cells from peripheral blood	blood
21	chr2:177518600-177519000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr2:177518600-177519000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr2:177518600-177519000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:177518600-177519000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:177518600-177519000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:177518600-177519200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:177518800-177519200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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