Variant report

Variant	rs34669525
Chromosome Location	chr1:159157854-159157855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159147315..159148979-chr1:159156262..159158868,2	K562	blood:

Variant related genes	Relation type
ENSG00000222552	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34439705	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34670849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34702074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34999456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72711380	1.00[AFR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159156800-159158400	Active TSS	Fetal Brain Female	brain
2	chr1:159156800-159158800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:159156800-159158800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr1:159156800-159158800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:159157000-159158200	Enhancers	Brain Hippocampus Middle	brain
6	chr1:159157000-159158400	Flanking Active TSS	Brain Germinal Matrix	brain
7	chr1:159157000-159158600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:159157000-159159000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr1:159157200-159158200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
10	chr1:159157200-159158600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:159157200-159158600	Active TSS	H9 Cell Line	embryonic stem cell
12	chr1:159157200-159159000	Active TSS	H1 Cell Line	embryonic stem cell
13	chr1:159157400-159158000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:159157400-159158000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:159157400-159158000	Enhancers	Brain Anterior Caudate	brain
16	chr1:159157400-159158000	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:159157400-159158000	Enhancers	Pancreas	Pancrea
18	chr1:159157400-159158400	Enhancers	Fetal Brain Male	brain
19	chr1:159157400-159158600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:159157400-159158800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr1:159157400-159158800	Active TSS	Brain Substantia Nigra	brain
22	chr1:159157400-159158800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
23	chr1:159157400-159158800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
24	chr1:159157600-159158000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
25	chr1:159157600-159158000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr1:159157600-159158000	Bivalent Enhancer	Fetal Lung	lung
27	chr1:159157600-159158000	Enhancers	Psoas Muscle	Psoas
28	chr1:159157600-159158200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:159157600-159158200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:159157600-159158400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
31	chr1:159157600-159158400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
32	chr1:159157600-159158400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
33	chr1:159157600-159158600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:159157600-159158600	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr1:159157600-159158600	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr1:159157600-159158600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:159157600-159158600	Enhancers	Placenta Amnion	Placenta Amnion
38	chr1:159157600-159158800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:159157600-159158800	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr1:159157600-159158800	Bivalent/Poised TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:159157600-159158800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
42	chr1:159157600-159159000	Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr1:159157800-159158000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:159157800-159158000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
45	chr1:159157800-159158000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:159157800-159158000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:159157800-159158000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:159157800-159158000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:159157800-159158000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
50	chr1:159157800-159158200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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