Variant report

Variant	rs34670849
Chromosome Location	chr1:159160805-159160806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159160373..159162508-chr1:159165397..159167632,2	K562	blood:
2	chr1:159155279..159157272-chr1:159160097..159162875,2	K562	blood:
3	chr1:159159900..159162596-chr1:159164063..159165886,2	K562	blood:

Variant related genes	Relation type
ENSG00000162706	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34439705	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34669525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34702074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34999456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72711380	1.00[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159157800-159167600	Weak transcription	Spleen	Spleen
2	chr1:159158400-159161400	Weak transcription	Fetal Brain Male	brain
3	chr1:159158400-159174000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:159158800-159161000	Enhancers	Brain Anterior Caudate	brain
5	chr1:159158800-159161600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:159158800-159161800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:159158800-159161800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:159158800-159171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:159158800-159177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:159158800-159177800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:159159000-159161000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:159159000-159161600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:159159000-159165800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:159159000-159168000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:159159400-159169200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:159159600-159163600	Strong transcription	Brain Germinal Matrix	brain
18	chr1:159159600-159173200	Strong transcription	Fetal Brain Female	brain
19	chr1:159160200-159161400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:159160400-159161000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:159160600-159161400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:159160800-159161800	Weak transcription	Fetal Stomach	stomach
23	chr1:159160800-159165200	Weak transcription	Brain Hippocampus Middle	brain

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