Variant report

Variant	rs34675777
Chromosome Location	chr9:100405627-100405628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100405436..100408239-chr9:100423009..100425764,2	K562	blood:
2	chr9:100404481..100406346-chr9:100406637..100409323,4	MCF-7	breast:
3	chr9:100403670..100406191-chr9:100444753..100446885,2	MCF-7	breast:
4	chr9:100405110..100407451-chr9:100457364..100460454,3	MCF-7	breast:
5	chr9:100403992..100406987-chr9:100418866..100421676,2	K562	blood:

Variant related genes	Relation type
ENSG00000136936	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16922598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16923144	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16923165	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176641	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176715	1.00[AMR][1000 genomes]
rs3176753	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59567200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59765747	1.00[AMR][1000 genomes]
rs73498334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500304	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550776	1.00[AMR][1000 genomes]
rs73552531	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100396800-100410200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:100397000-100405800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:100397000-100409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:100397000-100410200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:100397000-100410200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:100397000-100411000	Weak transcription	Esophagus	oesophagus
7	chr9:100397600-100409800	Weak transcription	Colonic Mucosa	Colon
8	chr9:100397800-100405800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:100398000-100410200	Weak transcription	Lung	lung
10	chr9:100398000-100418600	Weak transcription	Pancreas	Pancrea
11	chr9:100398400-100410200	Weak transcription	Fetal Intestine Small	intestine
12	chr9:100398400-100410200	Weak transcription	Fetal Stomach	stomach
13	chr9:100398400-100410200	Weak transcription	Spleen	Spleen
14	chr9:100398600-100409800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:100399200-100405800	Weak transcription	Thymus	Thymus
16	chr9:100399200-100421400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:100399400-100405800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:100399400-100409800	Weak transcription	Fetal Brain Male	brain
19	chr9:100399400-100410200	Weak transcription	Aorta	Aorta
20	chr9:100399400-100414600	Weak transcription	Right Atrium	heart
21	chr9:100399400-100415600	Weak transcription	Small Intestine	intestine
22	chr9:100399600-100426800	Weak transcription	Stomach Mucosa	stomach
23	chr9:100400800-100407200	Strong transcription	K562	blood
24	chr9:100400800-100451600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:100401000-100405800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:100401200-100410400	Weak transcription	Gastric	stomach
27	chr9:100401200-100429000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:100401200-100456000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr9:100401400-100409800	Weak transcription	Right Ventricle	heart
30	chr9:100401800-100412000	Strong transcription	Hela-S3	cervix
31	chr9:100402400-100422400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr9:100402400-100425000	Strong transcription	Primary B cells from cord blood	blood
33	chr9:100402400-100439600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:100402400-100451400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:100402400-100455600	Strong transcription	Dnd41	blood
36	chr9:100402600-100408600	Strong transcription	HUVEC	blood vessel
37	chr9:100402600-100410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr9:100402600-100456000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:100402600-100456200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr9:100402800-100415200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr9:100402800-100429000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:100402800-100454200	Strong transcription	Fetal Thymus	thymus
43	chr9:100402800-100456000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:100403000-100405800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr9:100403000-100407400	Strong transcription	Liver	Liver
46	chr9:100403000-100408000	Weak transcription	Brain Angular Gyrus	brain
47	chr9:100403000-100408600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:100403000-100408600	Strong transcription	Brain Germinal Matrix	brain
49	chr9:100403000-100411600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr9:100403000-100413600	Weak transcription	Fetal Heart	heart

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