Variant report

Variant	rs16922598
Chromosome Location	chr9:100377140-100377141
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100371781..100375300-chr9:100375938..100379259,4	K562	blood:
2	chr9:100232102..100233020-chr9:100377034..100377995,3	MCF-7	breast:
3	chr9:100228869..100231293-chr9:100376562..100379055,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196116	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10123528	1.00[JPT][hapmap]
rs16923144	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16923165	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2773344	1.00[JPT][hapmap]
rs2773350	1.00[JPT][hapmap]
rs2773354	1.00[JPT][hapmap]
rs2805768	1.00[JPT][hapmap]
rs2805771	1.00[JPT][hapmap]
rs2805773	1.00[JPT][hapmap]
rs2805774	1.00[JPT][hapmap]
rs2805778	1.00[JPT][hapmap]
rs2805831	1.00[JPT][hapmap]
rs2805835	1.00[JPT][hapmap]
rs2808682	1.00[JPT][hapmap]
rs3176641	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176715	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs3176753	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34675777	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59567200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59765747	1.00[AMR][1000 genomes]
rs73498334	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500304	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550776	1.00[AMR][1000 genomes]
rs73552531	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3373699	chr9:100376435-100379300	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3321736	chr9:100376450-100379280	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3443730	chr9:100376451-100379290	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3511172	chr9:100376470-100379283	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3431647	chr9:100376487-100379148	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3511171	chr9:100376500-100379239	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3511173	chr9:100376500-100379239	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3482560	chr9:100376509-100379214	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3482561	chr9:100376509-100379214	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3418221	chr9:100376912-100379216	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100348800-100384000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:100361000-100381200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:100361800-100383400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:100361800-100389000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:100361800-100394000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:100362200-100379000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:100363000-100394600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:100365200-100382200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:100365800-100389400	Weak transcription	Stomach Mucosa	stomach
10	chr9:100367400-100386200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:100367400-100387000	Weak transcription	HMEC	breast
12	chr9:100367600-100384000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:100367600-100390400	Weak transcription	Small Intestine	intestine
14	chr9:100367800-100383800	Weak transcription	A549	lung
15	chr9:100367800-100384000	Weak transcription	Aorta	Aorta
16	chr9:100367800-100384400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:100368200-100379400	Weak transcription	Gastric	stomach
18	chr9:100368200-100380400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr9:100368200-100386200	Weak transcription	Esophagus	oesophagus
20	chr9:100368200-100394000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:100368200-100394200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr9:100368400-100379800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:100368400-100379800	Weak transcription	Right Ventricle	heart
24	chr9:100368400-100384000	Weak transcription	Pancreas	Pancrea
25	chr9:100368400-100387800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:100368400-100394000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:100368600-100379800	Weak transcription	Hela-S3	cervix
28	chr9:100369000-100378600	Weak transcription	NHLF	lung
29	chr9:100369000-100386400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:100369000-100388200	Strong transcription	Fetal Muscle Leg	muscle
31	chr9:100369200-100377400	Weak transcription	Fetal Heart	heart
32	chr9:100369600-100382600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr9:100370800-100379400	Strong transcription	Fetal Thymus	thymus
34	chr9:100371000-100382400	Weak transcription	Fetal Intestine Small	intestine
35	chr9:100371200-100382800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr9:100372000-100377400	Strong transcription	Liver	Liver
37	chr9:100372000-100380400	Strong transcription	Placenta	Placenta
38	chr9:100372200-100377600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr9:100372200-100388200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:100372400-100377200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:100372800-100377400	Weak transcription	Brain Angular Gyrus	brain
42	chr9:100372800-100383200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:100372800-100387600	Weak transcription	Psoas Muscle	Psoas
44	chr9:100372800-100394000	Weak transcription	Colonic Mucosa	Colon
45	chr9:100373000-100383800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr9:100373000-100389400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr9:100373200-100386600	Weak transcription	HUVEC	blood vessel
48	chr9:100373400-100380200	Strong transcription	Dnd41	blood
49	chr9:100373400-100381000	Weak transcription	HSMM	muscle
50	chr9:100373400-100389400	Weak transcription	NHDF-Ad	bronchial

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