Variant report

Variant	rs10123528
Chromosome Location	chr9:100229390-100229391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100202190..100205138-chr9:100228533..100230539,2	K562	blood:
2	chr9:100220695..100224613-chr9:100226052..100229404,3	K562	blood:
3	chr9:100228650..100231026-chr9:100395241..100396818,2	K562	blood:

Variant related genes	Relation type
ENSG00000136925	Chromatin interaction
ENSG00000136937	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10125127	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10982027	1.00[AMR][1000 genomes]
rs16922598	1.00[JPT][hapmap]
rs2773344	1.00[JPT][hapmap]
rs2773350	1.00[JPT][hapmap]
rs2805774	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893609	chr9:100163998-100297592	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100175400-100230800	Weak transcription	Psoas Muscle	Psoas
2	chr9:100175600-100245200	Weak transcription	Right Ventricle	heart
3	chr9:100182000-100234200	Weak transcription	A549	lung
4	chr9:100182200-100236000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:100182200-100263400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:100188800-100230600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:100193200-100241400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:100194600-100238200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:100194600-100248800	Weak transcription	Small Intestine	intestine
10	chr9:100195400-100244600	Weak transcription	Colonic Mucosa	Colon
11	chr9:100195400-100259800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:100198000-100245200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:100200000-100235800	Weak transcription	NHDF-Ad	bronchial
14	chr9:100202800-100230800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:100202800-100231200	Weak transcription	Brain Substantia Nigra	brain
16	chr9:100203000-100231000	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:100203000-100236800	Weak transcription	NHLF	lung
18	chr9:100203200-100236000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:100203600-100262000	Weak transcription	Stomach Mucosa	stomach
20	chr9:100205400-100250000	Weak transcription	Esophagus	oesophagus
21	chr9:100206000-100230600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:100211800-100235400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:100212000-100244400	Weak transcription	Pancreas	Pancrea
24	chr9:100219400-100230800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:100219600-100230200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:100220000-100230800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:100220000-100230800	Weak transcription	Brain Angular Gyrus	brain
28	chr9:100220400-100237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:100221000-100230800	Weak transcription	HSMMtube	muscle
30	chr9:100221000-100231200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:100222200-100250000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr9:100222600-100252000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr9:100222800-100230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:100223200-100235600	Weak transcription	Left Ventricle	heart
35	chr9:100224400-100230000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr9:100224400-100232800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:100224600-100233400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:100224800-100231400	Strong transcription	Primary T cells from cord blood	blood
39	chr9:100225400-100230400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:100225600-100236400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr9:100226200-100229600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr9:100226400-100231000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr9:100226400-100231200	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr9:100226400-100252600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:100226600-100261600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:100226600-100262000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:100227000-100229400	Strong transcription	HepG2	liver
48	chr9:100227000-100230800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr9:100227000-100231600	Strong transcription	Primary B cells from cord blood	blood
50	chr9:100227000-100233400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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