Variant report

Variant	rs10982027
Chromosome Location	chr9:100180372-100180373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100176159..100177806-chr9:100179325..100182162,2	MCF-7	breast:
2	chr9:100179254..100180802-chr9:100361025..100362734,2	K562	blood:
3	chr9:100173722..100176324-chr9:100177093..100182723,6	MCF-7	breast:
4	chr9:100178564..100180754-chr9:100361025..100362737,2	K562	blood:

Variant related genes	Relation type
ENSG00000196116	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10123528	1.00[AMR][1000 genomes]
rs10125127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893609	chr9:100163998-100297592	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100175200-100180800	Weak transcription	Esophagus	oesophagus
2	chr9:100175400-100190400	Weak transcription	Aorta	Aorta
3	chr9:100175400-100190800	Weak transcription	Left Ventricle	heart
4	chr9:100175400-100230800	Weak transcription	Psoas Muscle	Psoas
5	chr9:100175600-100181000	Weak transcription	HUVEC	blood vessel
6	chr9:100175600-100189600	Weak transcription	Primary T cells from cord blood	blood
7	chr9:100175600-100191200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:100175600-100202600	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:100175600-100245200	Weak transcription	Right Ventricle	heart
10	chr9:100175800-100181200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:100175800-100181400	Weak transcription	HSMM	muscle
12	chr9:100176000-100180800	Weak transcription	Stomach Mucosa	stomach
13	chr9:100176000-100181000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:100176000-100181200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:100176000-100181200	Weak transcription	NHDF-Ad	bronchial
16	chr9:100176000-100181400	Weak transcription	A549	lung
17	chr9:100176000-100181400	Weak transcription	NHLF	lung
18	chr9:100176000-100183200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:100176000-100191200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:100176200-100180600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:100176200-100180800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:100176200-100180800	Weak transcription	Colonic Mucosa	Colon
23	chr9:100176200-100181000	Weak transcription	Pancreas	Pancrea
24	chr9:100176200-100181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:100176200-100181400	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:100176200-100182800	Weak transcription	Fetal Brain Female	brain
27	chr9:100176200-100185400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr9:100176200-100190400	Weak transcription	Spleen	Spleen
29	chr9:100176200-100194400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:100176200-100203000	Weak transcription	Dnd41	blood
31	chr9:100176400-100192000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:100176600-100180600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:100176600-100181000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:100176600-100181400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:100176600-100192600	Weak transcription	Fetal Brain Male	brain
36	chr9:100176800-100181400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:100178000-100180400	Weak transcription	Fetal Intestine Small	intestine
38	chr9:100178200-100181400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr9:100178600-100180800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:100179400-100182200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr9:100179600-100181200	Weak transcription	HepG2	liver
42	chr9:100179600-100181600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:100179600-100190400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:100179600-100190800	Weak transcription	Lung	lung
45	chr9:100179800-100180600	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr9:100179800-100182000	Enhancers	Small Intestine	intestine
47	chr9:100179800-100182200	Enhancers	Duodenum Mucosa	Duodenum
48	chr9:100179800-100190600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:100180000-100180800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:100180000-100181200	Enhancers	Monocytes-CD14+_RO01746	blood

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