Variant report

Variant	rs10125127
Chromosome Location	chr9:100200852-100200853
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100174630..100178511-chr9:100198260..100202399,3	K562	blood:
2	chr9:100186864..100189342-chr9:100200163..100202535,2	K562	blood:
3	chr9:100200045..100202136-chr9:100203280..100205381,2	MCF-7	breast:
4	chr9:100195271..100197390-chr9:100200071..100202351,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10123528	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10982027	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893609	chr9:100163998-100297592	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100175400-100230800	Weak transcription	Psoas Muscle	Psoas
2	chr9:100175600-100202600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:100175600-100245200	Weak transcription	Right Ventricle	heart
4	chr9:100176200-100203000	Weak transcription	Dnd41	blood
5	chr9:100182000-100205200	Weak transcription	Esophagus	oesophagus
6	chr9:100182000-100215600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:100182000-100234200	Weak transcription	A549	lung
8	chr9:100182200-100202400	Weak transcription	NHLF	lung
9	chr9:100182200-100202800	Weak transcription	HSMMtube	muscle
10	chr9:100182200-100236000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:100182200-100263400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:100182400-100203800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:100182600-100208600	Weak transcription	HSMM	muscle
14	chr9:100184600-100205200	Weak transcription	Brain Angular Gyrus	brain
15	chr9:100185400-100204200	Weak transcription	Fetal Heart	heart
16	chr9:100188200-100204400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:100188600-100205800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:100188800-100230600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:100189200-100213800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:100189600-100203400	Weak transcription	Brain Germinal Matrix	brain
21	chr9:100189800-100202800	Weak transcription	Fetal Thymus	thymus
22	chr9:100190400-100203800	Weak transcription	NHEK	skin
23	chr9:100190600-100203800	Weak transcription	HMEC	breast
24	chr9:100191000-100201600	Weak transcription	Fetal Stomach	stomach
25	chr9:100191400-100201600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:100191800-100205800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:100192000-100202400	Weak transcription	Gastric	stomach
28	chr9:100193000-100203800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:100193000-100227600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:100193200-100241400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:100194400-100204200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr9:100194400-100225800	Weak transcription	Spleen	Spleen
33	chr9:100194600-100201600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:100194600-100201600	Weak transcription	Lung	lung
35	chr9:100194600-100238200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr9:100194600-100248800	Weak transcription	Small Intestine	intestine
37	chr9:100194800-100201600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:100194800-100205000	Weak transcription	Aorta	Aorta
39	chr9:100194800-100209800	Weak transcription	HUVEC	blood vessel
40	chr9:100195200-100201600	Weak transcription	Placenta	Placenta
41	chr9:100195200-100204800	Weak transcription	Thymus	Thymus
42	chr9:100195400-100201600	Weak transcription	Left Ventricle	heart
43	chr9:100195400-100201800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:100195400-100206600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:100195400-100227600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:100195400-100244600	Weak transcription	Colonic Mucosa	Colon
47	chr9:100195400-100259800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr9:100195600-100201600	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:100195800-100211600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr9:100196400-100201600	Weak transcription	Brain Anterior Caudate	brain

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