Variant report

Variant	rs34688659
Chromosome Location	chr8:125843837-125843838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125841473..125844398-chr8:125845586..125849365,3	MCF-7	breast:
2	chr8:125838350..125840012-chr8:125843186..125845193,2	MCF-7	breast:
3	chr8:125843629..125846063-chr8:125847021..125848938,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13254805	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34358735	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55894065	0.82[ASN][1000 genomes]
rs6470287	0.92[ASN][1000 genomes]
rs9649956	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv528288	chr8:125838127-125847357	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125836400-125850800	Weak transcription	Right Atrium	heart
2	chr8:125840800-125844000	Enhancers	K562	blood
3	chr8:125841200-125844000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:125842000-125844000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:125842200-125844800	Weak transcription	Psoas Muscle	Psoas
6	chr8:125842200-125845600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:125842400-125844000	Enhancers	Stomach Mucosa	stomach
8	chr8:125842400-125844600	Weak transcription	Esophagus	oesophagus
9	chr8:125842400-125845800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:125842400-125846600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:125842400-125846600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:125843000-125844000	Enhancers	Hela-S3	cervix
13	chr8:125843000-125844000	Enhancers	NHDF-Ad	bronchial
14	chr8:125843000-125845400	Enhancers	NHEK	skin
15	chr8:125843200-125844000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:125843200-125844000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:125843400-125845400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:125843600-125844000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:125843600-125844600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:125843600-125844800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:125843600-125845200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:125843600-125845400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:125843600-125846400	Weak transcription	Fetal Heart	heart
24	chr8:125843600-125846600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:125843600-125846800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:125843600-125846800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:125843800-125844800	Weak transcription	HMEC	breast
28	chr8:125843800-125845200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:125843800-125845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:125843800-125846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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