Variant report

Variant	rs6470287
Chromosome Location	chr8:125825724-125825725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125824069..125826348-chr8:125852488..125855335,2	K562	blood:
2	chr8:125825097..125827152-chr8:125954026..125955996,2	K562	blood:
3	chr8:125825562..125827857-chr8:125852824..125856863,3	MCF-7	breast:
4	chr8:125549492..125551989-chr8:125824960..125829256,5	K562	blood:
5	chr8:125824915..125827447-chr8:125870554..125873163,2	K562	blood:
6	chr8:125730674..125732693-chr8:125825139..125827888,2	K562	blood:
7	chr8:125822757..125824811-chr8:125825500..125827545,2	MCF-7	breast:
8	chr8:125653582..125656116-chr8:125824961..125827801,3	K562	blood:
9	chr8:125825718..125829730-chr8:126008807..126013107,8	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000253513	Chromatin interaction
ENSG00000104549	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000249816	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12216831	1.00[JPT][hapmap]
rs13254805	0.92[ASN][1000 genomes]
rs34358735	0.92[ASN][1000 genomes]
rs34688659	0.92[ASN][1000 genomes]
rs55894065	0.92[ASN][1000 genomes]
rs7000095	1.00[CHB][hapmap]
rs9649956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125821600-125827000	Weak transcription	Fetal Lung	lung
2	chr8:125821800-125827200	Weak transcription	Adipose Nuclei	Adipose
3	chr8:125821800-125827400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:125822000-125826400	Weak transcription	HSMM	muscle
5	chr8:125822000-125826600	Weak transcription	HSMMtube	muscle
6	chr8:125822200-125826400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:125822200-125827000	Weak transcription	Osteobl	bone
8	chr8:125823800-125827000	Weak transcription	Fetal Brain Male	brain
9	chr8:125825200-125827400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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