Variant report

Variant	rs7000095
Chromosome Location	chr8:125821846-125821847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs62528792	1.00[AFR][1000 genomes]
rs62528825	1.00[AFR][1000 genomes]
rs6470287	1.00[CHB][hapmap]
rs7831551	1.00[AFR][1000 genomes]
rs9649956	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7000095	ATAD2	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125813800-125822400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:125819000-125822200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr8:125819400-125822000	Enhancers	HSMMtube	muscle
4	chr8:125820000-125822000	Enhancers	HSMM	muscle
5	chr8:125820000-125822400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:125820200-125822200	Enhancers	Osteobl	bone
7	chr8:125821400-125822400	Enhancers	HMEC	breast
8	chr8:125821600-125827000	Weak transcription	Fetal Lung	lung
9	chr8:125821800-125827200	Weak transcription	Adipose Nuclei	Adipose
10	chr8:125821800-125827400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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