Variant report

Variant	rs62528792
Chromosome Location	chr8:125741792-125741793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125734815..125743876-chr8:125864194..125871100,21	MCF-7	breast:
2	chr8:125740480..125742026-chr8:125858931..125861971,3	MCF-7	breast:
3	chr8:125736316..125742243-chr8:125861977..125870763,24	MCF-7	breast:
4	chr8:125550912..125552543-chr8:125740144..125742250,2	MCF-7	breast:
5	chr8:125739556..125742250-chr8:125984221..125986060,3	MCF-7	breast:
6	chr8:125549831..125551409-chr8:125739286..125741874,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180938	Chromatin interaction
ENSG00000255080	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000249816	Chromatin interaction
ENSG00000147684	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62528825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000095	1.00[AFR][1000 genomes]
rs7831551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv612147	chr8:125733120-125751065	Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125739000-125743400	Weak transcription	K562	blood
2	chr8:125741000-125743600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:125741200-125742400	Enhancers	Spleen	Spleen
4	chr8:125741200-125742600	Enhancers	Fetal Muscle Leg	muscle
5	chr8:125741200-125744000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:125741200-125746800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:125741400-125741800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:125741400-125742000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:125741400-125742000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:125741400-125742200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:125741400-125742200	Enhancers	HepG2	liver
12	chr8:125741400-125742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:125741400-125743600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:125741400-125747000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:125741600-125741800	Enhancers	Fetal Brain Male	brain
16	chr8:125741600-125741800	Enhancers	Fetal Heart	heart
17	chr8:125741600-125742000	Enhancers	Stomach Smooth Muscle	stomach
18	chr8:125741600-125742600	Enhancers	Fetal Brain Female	brain
19	chr8:125741600-125743000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:125741600-125743200	Enhancers	Brain Germinal Matrix	brain
21	chr8:125741600-125743600	Weak transcription	Placenta	Placenta
22	chr8:125741600-125746800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:125741600-125748400	Weak transcription	Psoas Muscle	Psoas

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