Variant report
| Variant | rs34706383 |
|---|---|
| Chromosome Location | chr4:16433449-16433450 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:16432922..16435405-chr4:16435500..16437482,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10008301 | 0.82[ASN][1000 genomes] |
| rs10009594 | 0.82[ASN][1000 genomes] |
| rs10010747 | 0.82[ASN][1000 genomes] |
| rs10025710 | 0.82[ASN][1000 genomes] |
| rs1158029 | 0.80[ASN][1000 genomes] |
| rs12509613 | 0.82[ASN][1000 genomes] |
| rs17420654 | 0.82[ASN][1000 genomes] |
| rs2036358 | 0.82[ASN][1000 genomes] |
| rs2036359 | 0.82[ASN][1000 genomes] |
| rs2872340 | 0.82[ASN][1000 genomes] |
| rs58132667 | 0.85[ASN][1000 genomes] |
| rs6449243 | 0.82[ASN][1000 genomes] |
| rs6449244 | 0.82[ASN][1000 genomes] |
| rs6449245 | 0.82[ASN][1000 genomes] |
| rs6449246 | 0.82[ASN][1000 genomes] |
| rs6449247 | 0.82[ASN][1000 genomes] |
| rs6449248 | 0.82[ASN][1000 genomes] |
| rs6449250 | 0.82[ASN][1000 genomes] |
| rs6816276 | 0.82[ASN][1000 genomes] |
| rs6821530 | 0.82[ASN][1000 genomes] |
| rs6821775 | 0.82[ASN][1000 genomes] |
| rs6822901 | 0.80[ASN][1000 genomes] |
| rs6826636 | 0.82[ASN][1000 genomes] |
| rs6829900 | 0.82[ASN][1000 genomes] |
| rs6833532 | 0.82[ASN][1000 genomes] |
| rs6833776 | 0.82[ASN][1000 genomes] |
| rs6835530 | 0.82[ASN][1000 genomes] |
| rs6835536 | 0.82[ASN][1000 genomes] |
| rs6841546 | 0.80[ASN][1000 genomes] |
| rs6844661 | 0.82[ASN][1000 genomes] |
| rs6855787 | 0.82[ASN][1000 genomes] |
| rs7676121 | 0.82[ASN][1000 genomes] |
| rs9996850 | 0.82[ASN][1000 genomes] |
| rs9999489 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004821 | chr4:16055996-16830629 | Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv537046 | chr4:16055996-16830629 | Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv428755 | chr4:16366311-16528135 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:16429800-16435200 | Weak transcription | Fetal Brain Male | brain |
