Variant report

Variant	rs58132667
Chromosome Location	chr4:16417121-16417122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008301	0.96[ASN][1000 genomes]
rs10009594	0.96[ASN][1000 genomes]
rs10010747	0.96[ASN][1000 genomes]
rs10025710	0.96[ASN][1000 genomes]
rs1158028	0.94[ASN][1000 genomes]
rs1158029	0.94[ASN][1000 genomes]
rs11946067	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12509613	0.96[ASN][1000 genomes]
rs13120292	0.80[EUR][1000 genomes]
rs17420654	0.96[ASN][1000 genomes]
rs2036358	0.96[ASN][1000 genomes]
rs2036359	0.96[ASN][1000 genomes]
rs28607770	0.91[ASN][1000 genomes]
rs2872340	0.96[ASN][1000 genomes]
rs34706383	0.85[ASN][1000 genomes]
rs4698142	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6449242	0.91[ASN][1000 genomes]
rs6449243	0.96[ASN][1000 genomes]
rs6449244	0.96[ASN][1000 genomes]
rs6449245	0.96[ASN][1000 genomes]
rs6449246	0.96[ASN][1000 genomes]
rs6449247	0.96[ASN][1000 genomes]
rs6449248	0.96[ASN][1000 genomes]
rs6449250	0.96[ASN][1000 genomes]
rs6449251	0.94[ASN][1000 genomes]
rs6815236	0.94[ASN][1000 genomes]
rs6816276	0.96[ASN][1000 genomes]
rs6821530	0.96[ASN][1000 genomes]
rs6821775	0.96[ASN][1000 genomes]
rs6822901	0.94[ASN][1000 genomes]
rs6826636	0.96[ASN][1000 genomes]
rs6829900	0.96[ASN][1000 genomes]
rs6832080	0.94[ASN][1000 genomes]
rs6833532	0.96[ASN][1000 genomes]
rs6833776	0.96[ASN][1000 genomes]
rs6835530	0.96[ASN][1000 genomes]
rs6835536	0.96[ASN][1000 genomes]
rs6841546	0.94[ASN][1000 genomes]
rs6844661	0.96[ASN][1000 genomes]
rs6855787	0.96[ASN][1000 genomes]
rs7676121	0.96[ASN][1000 genomes]
rs9996850	0.96[ASN][1000 genomes]
rs9999489	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763342	chr4:16413300-16430564	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16413400-16417200	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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