Variant report
| Variant | rs4698142 |
|---|---|
| Chromosome Location | chr4:16401857-16401858 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ZEB2P1 | TF binding region |
| ENSG00000248138 | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10002625 | 0.83[EUR][1000 genomes] |
| rs10939659 | 0.83[EUR][1000 genomes] |
| rs10939661 | 0.85[EUR][1000 genomes] |
| rs11946067 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13102329 | 0.83[EUR][1000 genomes] |
| rs13110673 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs13111956 | 0.86[EUR][1000 genomes] |
| rs13120292 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13121695 | 0.82[EUR][1000 genomes] |
| rs13131868 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13132621 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs16893287 | 0.82[EUR][1000 genomes] |
| rs34019415 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs34274223 | 0.86[EUR][1000 genomes] |
| rs34880816 | 0.83[EUR][1000 genomes] |
| rs35281534 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs35892656 | 0.86[EUR][1000 genomes] |
| rs36104258 | 0.86[EUR][1000 genomes] |
| rs4698139 | 0.83[EUR][1000 genomes] |
| rs4698140 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4698468 | 0.86[EUR][1000 genomes] |
| rs58132667 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7688779 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9994269 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004821 | chr4:16055996-16830629 | Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv537046 | chr4:16055996-16830629 | Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006449 | chr4:16338191-16412544 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv428755 | chr4:16366311-16528135 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv518102 | chr4:16386449-16410294 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
