Variant report

Variant	rs4698140
Chromosome Location	chr4:16386997-16386998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10002625	0.94[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10939659	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10939661	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11946067	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13102329	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13110673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13111956	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13120292	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13121695	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13131868	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13132621	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16893287	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34019415	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34274223	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34880816	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35281534	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35892656	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36104258	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4698139	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4698142	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4698468	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4698480	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs7688779	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9994269	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1006449	chr4:16338191-16412544	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv518102	chr4:16386449-16410294	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4698140	NCAPG	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16385600-16388000	Enhancers	Fetal Muscle Leg	muscle

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