Variant report

Variant	rs4698480
Chromosome Location	chr4:16401461-16401462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002625	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs10939659	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10939661	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11946067	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13102329	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13110673	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13111956	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13120292	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13121695	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13131868	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13132621	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16893287	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34019415	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34274223	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34880816	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35281534	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35892656	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36104258	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4698139	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4698140	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4698142	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698468	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58132667	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7688779	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9994269	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1006449	chr4:16338191-16412544	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv518102	chr4:16386449-16410294	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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