Variant report

Variant	rs34717677
Chromosome Location	chr10:97312805-97312806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97305912..97308530-chr10:97311525..97313348,3	K562	blood:
2	chr10:97308793..97313420-chr10:97319109..97323255,4	K562	blood:
3	chr10:97311021..97313047-chr10:97319994..97322763,2	K562	blood:
4	chr10:97307694..97310147-chr10:97311672..97314430,2	K562	blood:
5	chr10:97302505..97305579-chr10:97311139..97314608,3	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12775598	1.00[AFR][1000 genomes]
rs34460315	1.00[AFR][1000 genomes]
rs34597764	0.81[EUR][1000 genomes]
rs34969869	1.00[AFR][1000 genomes]
rs35360884	1.00[AFR][1000 genomes]
rs35961468	1.00[AFR][1000 genomes]
rs71482359	1.00[AFR][1000 genomes]
rs71482361	1.00[AFR][1000 genomes]
rs7905724	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97301000-97315200	Enhancers	HepG2	liver
2	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97305200-97319000	Weak transcription	HSMM	muscle
4	chr10:97306800-97313000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97309400-97313000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:97309600-97313000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:97309600-97313000	Enhancers	Psoas Muscle	Psoas
9	chr10:97309600-97313800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:97310400-97318400	Weak transcription	Fetal Kidney	kidney
11	chr10:97310800-97313600	Enhancers	Colon Smooth Muscle	Colon
12	chr10:97310800-97316800	Weak transcription	Ovary	ovary
13	chr10:97310800-97317800	Weak transcription	Pancreas	Pancrea
14	chr10:97311000-97313400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:97311000-97314800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:97311000-97316800	Weak transcription	Gastric	stomach
17	chr10:97311000-97318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:97311200-97313200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:97311200-97314600	Weak transcription	Fetal Brain Male	brain
20	chr10:97311200-97315000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:97311200-97315000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:97311200-97317000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:97311400-97313200	Weak transcription	Fetal Brain Female	brain
24	chr10:97311400-97313200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:97311400-97313400	Weak transcription	K562	blood
26	chr10:97311400-97313600	Enhancers	A549	lung
27	chr10:97311400-97313800	Enhancers	Rectal Smooth Muscle	rectum
28	chr10:97311400-97315000	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:97311400-97315400	Weak transcription	Right Ventricle	heart
30	chr10:97311400-97315600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:97311400-97316800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:97311400-97316800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:97311400-97316800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:97311400-97317000	Weak transcription	Brain Angular Gyrus	brain
35	chr10:97311400-97317200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:97311400-97318400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:97311600-97314200	Weak transcription	Liver	Liver
38	chr10:97311600-97315000	Weak transcription	Fetal Heart	heart
39	chr10:97311600-97315400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:97311600-97317400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr10:97312000-97314200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:97312000-97314800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:97312000-97314800	Weak transcription	Aorta	Aorta
44	chr10:97312200-97313000	Enhancers	Stomach Mucosa	stomach
45	chr10:97312400-97313000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:97312400-97313000	Enhancers	Left Ventricle	heart
47	chr10:97312400-97313800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:97312600-97313000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:97312600-97313000	Enhancers	Spleen	Spleen
50	chr10:97312600-97313400	Enhancers	Rectal Mucosa Donor 31	rectum

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