Variant report

Variant	rs34724856
Chromosome Location	chr2:67790707-67790708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67789891..67792734-chr2:67796111..67797730,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10490723	0.83[ASN][1000 genomes]
rs12477088	0.86[ASN][1000 genomes]
rs12618268	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12987509	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12989021	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12992403	0.89[ASN][1000 genomes]
rs12997331	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13003698	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13005138	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13013880	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13019532	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13021903	0.91[ASN][1000 genomes]
rs13023342	0.94[ASN][1000 genomes]
rs13025342	0.88[ASN][1000 genomes]
rs13025376	0.84[ASN][1000 genomes]
rs13028371	0.91[ASN][1000 genomes]
rs17033996	0.85[ASN][1000 genomes]
rs2861683	0.86[ASN][1000 genomes]
rs2861685	0.87[ASN][1000 genomes]
rs2861691	0.85[ASN][1000 genomes]
rs35002785	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35179846	0.90[ASN][1000 genomes]
rs35820615	0.96[ASN][1000 genomes]
rs4362542	0.85[ASN][1000 genomes]
rs4465757	0.81[ASN][1000 genomes]
rs4542832	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62156279	0.96[ASN][1000 genomes]
rs6546315	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546319	0.85[ASN][1000 genomes]
rs6731513	0.84[ASN][1000 genomes]
rs6732490	0.84[ASN][1000 genomes]
rs6746168	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6756226	0.83[ASN][1000 genomes]
rs6760893	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67786400-67793600	Enhancers	Hela-S3	cervix
2	chr2:67786600-67790800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:67788800-67791600	Weak transcription	Left Ventricle	heart
4	chr2:67788800-67792800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:67789000-67790800	Weak transcription	NHLF	lung
6	chr2:67789000-67791400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:67789200-67791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:67789200-67791400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:67789200-67791400	Enhancers	Fetal Heart	heart
10	chr2:67789200-67791400	Weak transcription	NH-A	brain
11	chr2:67789200-67791600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:67789200-67791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:67789200-67791600	Weak transcription	HSMMtube	muscle
14	chr2:67789200-67792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:67789200-67793000	Weak transcription	Fetal Stomach	stomach
16	chr2:67789400-67790800	Weak transcription	Osteobl	bone
17	chr2:67789400-67795000	Weak transcription	Fetal Lung	lung
18	chr2:67789800-67792600	Weak transcription	HUVEC	blood vessel
19	chr2:67789800-67795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:67790200-67791600	Weak transcription	Stomach Mucosa	stomach
21	chr2:67790400-67794800	Enhancers	HSMM	muscle
22	chr2:67790400-67798600	Weak transcription	Pancreas	Pancrea
23	chr2:67790600-67791000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:67790600-67791000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:67790600-67791200	Weak transcription	A549	lung

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