Variant report

Variant	rs6732490
Chromosome Location	chr2:67860810-67860811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10196304	0.83[ASN][1000 genomes]
rs10490723	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12477088	0.88[ASN][1000 genomes]
rs12618268	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12987509	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12989021	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12992403	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12997331	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13003698	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13005138	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13013880	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13019532	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13021903	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13023342	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13025342	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13025376	0.84[ASN][1000 genomes]
rs13028371	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1430786	0.91[ASN][1000 genomes]
rs17033996	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2861683	0.87[ASN][1000 genomes]
rs2861685	0.86[ASN][1000 genomes]
rs2861691	0.86[ASN][1000 genomes]
rs34724856	0.84[ASN][1000 genomes]
rs35002785	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35179846	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35820615	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4362542	0.88[ASN][1000 genomes]
rs4542832	0.83[ASN][1000 genomes]
rs62156279	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6546315	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6546319	0.87[ASN][1000 genomes]
rs6731513	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6746168	0.89[ASW][hapmap];0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.82[ASN][1000 genomes]
rs6756226	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6760893	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9789546	0.88[ASN][1000 genomes]
rs980226	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6732490	SNRPG	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67860000-67861400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:67860200-67861000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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