Variant report

Variant	rs9789546
Chromosome Location	chr2:67869547-67869548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10196304	0.86[ASN][1000 genomes]
rs12992403	0.84[ASN][1000 genomes]
rs13021903	0.83[ASN][1000 genomes]
rs13028371	0.82[ASN][1000 genomes]
rs1430786	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17033996	0.89[ASN][1000 genomes]
rs35179846	0.81[ASN][1000 genomes]
rs6732490	0.88[ASN][1000 genomes]
rs6746168	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6756226	0.87[ASN][1000 genomes]
rs6760893	0.88[ASN][1000 genomes]
rs980226	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67866800-67884200	Weak transcription	Aorta	Aorta
2	chr2:67867200-67872400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:67867200-67872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:67869200-67869600	Enhancers	Fetal Kidney	kidney
5	chr2:67869200-67869600	Flanking Active TSS	Hela-S3	cervix
6	chr2:67869200-67871200	Enhancers	Fetal Lung	lung
7	chr2:67869400-67873600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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