Variant report

Variant	rs34740973
Chromosome Location	chr4:74133843-74133844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74132926..74135359-chr4:74140431..74141977,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10034689	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap]
rs10035001	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap]
rs10050235	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap]
rs10805059	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs11724514	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11736349	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11935070	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs1534450	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap]
rs4072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4694156	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs5020219	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap]
rs58721459	0.92[ASN][1000 genomes]
rs60190643	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6829551	0.81[GIH][hapmap]
rs6850870	0.96[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs7688637	0.81[EUR][1000 genomes]
rs9291182	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	esv3350599	chr4:74122400-74142462	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74125800-74149000	Weak transcription	Ovary	ovary
2	chr4:74126000-74153400	Weak transcription	HSMMtube	muscle
3	chr4:74126200-74142800	Weak transcription	Adipose Nuclei	Adipose
4	chr4:74126200-74142800	Weak transcription	Aorta	Aorta
5	chr4:74126400-74142800	Weak transcription	Fetal Lung	lung
6	chr4:74126400-74147000	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:74126600-74140200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:74126600-74140200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:74126600-74140400	Weak transcription	NHEK	skin
10	chr4:74126600-74141000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:74126600-74142800	Weak transcription	Primary B cells from cord blood	blood
12	chr4:74126600-74142800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:74126600-74147000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:74126600-74147000	Weak transcription	Fetal Stomach	stomach
15	chr4:74126600-74149200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:74126600-74152400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:74126800-74140400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:74127000-74138600	Weak transcription	Fetal Intestine Small	intestine
19	chr4:74127000-74139600	Weak transcription	Brain Substantia Nigra	brain
20	chr4:74127000-74158600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:74127200-74154800	Weak transcription	Left Ventricle	heart
22	chr4:74127400-74140600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:74127400-74154000	Weak transcription	Brain Angular Gyrus	brain
24	chr4:74129200-74142800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:74129200-74143600	Weak transcription	HSMM	muscle
26	chr4:74129800-74142800	Weak transcription	Primary T cells from cord blood	blood
27	chr4:74133000-74138400	Weak transcription	Liver	Liver
28	chr4:74133400-74140200	Weak transcription	HepG2	liver

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