Variant report

Variant	rs6829551
Chromosome Location	chr4:74173715-74173716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:74124898..74126656-chr4:74172916..74175710,2	K562	blood:
2	chr4:74123301..74125332-chr4:74173631..74175181,2	MCF-7	breast:
3	chr4:74124329..74126637-chr4:74173484..74176922,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250220	Chromatin interaction
ENSG00000132466	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10029695	0.91[AFR][1000 genomes]
rs10029956	0.91[AFR][1000 genomes]
rs10030080	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10032380	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13106620	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16849267	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16849364	0.89[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16849366	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28821191	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34681098	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34787727	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34898621	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35215741	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3822100	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs4364229	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4446279	0.84[CEU][hapmap];0.83[CHB][hapmap];0.88[MKK][hapmap];0.81[YRI][hapmap]
rs4591567	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4640638	0.94[CEU][hapmap];0.83[CHB][hapmap];0.80[YRI][hapmap]
rs6829532	0.88[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.92[MKK][hapmap];0.81[YRI][hapmap]
rs6834059	0.94[CEU][hapmap];0.83[CHB][hapmap];0.81[YRI][hapmap]
rs6836787	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6845493	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7356520	0.91[AFR][1000 genomes]
rs7657840	0.90[LWK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6829551	SULT1E1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74159000-74174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:74165800-74174200	Weak transcription	Liver	Liver
3	chr4:74169800-74174400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:74173400-74174400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:74173600-74174400	Enhancers	Brain Inferior Temporal Lobe	brain

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