Variant report

Variant	rs4591567
Chromosome Location	chr4:74208645-74208646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74206358..74209177-chr4:74518525..74521196,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALB-5	chr4:74208344-74209403	NONHSAT096842

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10008400	0.83[AFR][1000 genomes]
rs10030080	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10032380	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12510553	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13106620	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16849267	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16849364	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16849366	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28678620	0.81[AFR][1000 genomes]
rs28733441	0.81[AFR][1000 genomes]
rs28821191	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34681098	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34787727	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34898621	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35215741	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822100	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs4364229	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4446279	0.89[CEU][hapmap];0.89[CHB][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs4640638	0.89[CEU][hapmap];0.89[CHB][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs667	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6829532	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6829551	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6834059	0.90[CEU][hapmap];0.89[CHB][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs6836787	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6845493	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74205800-74208800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:74207800-74209000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:74207800-74209000	Weak transcription	Pancreas	Pancrea
4	chr4:74207800-74209200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:74207800-74209600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:74208000-74209000	Active TSS	Liver	Liver
7	chr4:74208000-74209200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:74208000-74209200	Enhancers	HepG2	liver
9	chr4:74208600-74209400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:74208600-74209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links