Variant report

Variant	rs6834059
Chromosome Location	chr4:74301675-74301676
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr4:74301641-74302043	HepG2	liver:	n/a	chr4:74301702-74301714
2	ARID3A	chr4:74301534-74302099	HepG2	liver:	n/a	n/a
3	NFIC	chr4:74301325-74304839	HepG2	liver:	n/a	chr4:74301812-74301828 chr4:74301812-74301829
4	TEAD4	chr4:74301574-74304611	HepG2	liver:	n/a	n/a
5	EP300	chr4:74301528-74302117	HepG2	liver:	n/a	n/a
6	EP300	chr4:74301592-74302019	HepG2	liver:	n/a	n/a
7	FOXA1	chr4:74301526-74302161	HepG2	liver:	n/a	chr4:74301702-74301714
8	NFIC	chr4:74301602-74302152	HepG2	liver:	n/a	chr4:74301812-74301828 chr4:74301812-74301829
9	HEY1	chr4:74301659-74307079	HepG2	liver:	n/a	n/a
10	MAFF	chr4:74301599-74301925	HepG2	liver:	n/a	n/a
11	FOXA1	chr4:74301515-74302335	HepG2	liver:	n/a	chr4:74301702-74301714
12	MYBL2	chr4:74301586-74307110	HepG2	liver:	n/a	chr4:74303086-74303100
13	HNF4A	chr4:74301654-74302052	HepG2	liver:	n/a	n/a
14	MBD4	chr4:74301622-74307089	HepG2	liver:	n/a	n/a
15	SP1	chr4:74301627-74302064	HepG2	liver:	n/a	n/a
16	FOXA1	chr4:74301605-74302022	HepG2	liver:	n/a	chr4:74301702-74301714
17	HDAC2	chr4:74301627-74302028	HepG2	liver:	n/a	chr4:74301740-74301754
18	FOXA2	chr4:74301525-74302254	HepG2	liver:	n/a	chr4:74301702-74301714
19	POLR2A	chr4:74301174-74301776	K562	blood:	n/a	n/a

Variant related genes	Relation type
AFP	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10002756	0.95[JPT][hapmap]
rs10020432	1.00[JPT][hapmap]
rs10031441	1.00[JPT][hapmap]
rs12500723	0.82[EUR][1000 genomes]
rs12506899	1.00[JPT][hapmap]
rs12510553	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13106620	0.85[EUR][1000 genomes]
rs16849267	0.83[EUR][1000 genomes]
rs16849364	0.94[CEU][hapmap];0.94[CHB][hapmap];0.87[EUR][1000 genomes]
rs16849366	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16849384	0.81[JPT][hapmap]
rs16849508	0.81[JPT][hapmap]
rs2298839	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs28678620	0.82[AFR][1000 genomes]
rs28733441	0.82[AFR][1000 genomes]
rs28821191	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34681098	0.82[EUR][1000 genomes]
rs34787727	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34898621	0.85[EUR][1000 genomes]
rs3796676	0.81[JPT][hapmap]
rs3822100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4364229	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4446279	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591567	0.83[EUR][1000 genomes]
rs4640638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6829532	0.94[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6829551	0.94[CEU][hapmap];0.83[CHB][hapmap];0.81[YRI][hapmap]
rs7660680	0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74298600-74310800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:74300400-74307600	Weak transcription	Liver	Liver
3	chr4:74301200-74301800	Flanking Active TSS	HepG2	liver
4	chr4:74301400-74302000	Enhancers	Fetal Intestine Small	intestine
5	chr4:74301400-74302400	Enhancers	Fetal Intestine Large	intestine

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