Variant report

Variant	rs4364229
Chromosome Location	chr4:74254678-74254679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10008400	0.83[AFR][1000 genomes]
rs10030080	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10032380	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510553	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13106620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849267	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16849364	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16849366	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28678620	0.91[AFR][1000 genomes]
rs28733441	0.91[AFR][1000 genomes]
rs28821191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34681098	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34787727	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34898621	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35215741	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3822100	0.88[CEU][hapmap];0.94[CHB][hapmap];0.83[EUR][1000 genomes]
rs4446279	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4591567	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4640638	0.89[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs667	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6829532	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6829551	0.94[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6834059	0.89[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6836787	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6845493	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74253000-74255200	Enhancers	HepG2	liver
2	chr4:74253000-74255600	Enhancers	Liver	Liver
3	chr4:74254200-74255400	Enhancers	Fetal Intestine Large	intestine
4	chr4:74254600-74257600	Weak transcription	Fetal Intestine Small	intestine

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