Variant report

Variant	rs6836787
Chromosome Location	chr4:74161690-74161691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10030080	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10032380	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12510553	0.81[EUR][1000 genomes]
rs13106620	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16849267	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16849364	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16849366	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28821191	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34681098	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34787727	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34898621	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35215741	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4364229	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4591567	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs667	0.80[EUR][1000 genomes]
rs6829551	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6845493	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74159000-74164800	Weak transcription	Liver	Liver
2	chr4:74159000-74170200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:74159000-74174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:74159600-74162600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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