Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10029695	0.84[AFR][1000 genomes]
rs10029956	0.84[AFR][1000 genomes]
rs10030080	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510553	0.82[EUR][1000 genomes]
rs13106620	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16849267	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16849364	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16849366	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28821191	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34681098	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34787727	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34898621	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35215741	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4364229	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4591567	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs667	0.81[EUR][1000 genomes]
rs6829551	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836787	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6845493	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7356520	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74159000-74164800	Weak transcription	Liver	Liver
2	chr4:74159000-74170200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:74159000-74174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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